Merge pull request #4 from StefaanVerwimp/main

typo fix and added engine type blast
rpetit3 · Aug 14, 2024 · f04b6b7 · f04b6b7
2 parents b160f88 + 3f6549b
commit f04b6b7
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Showing 4 changed files with 5 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -38,9 +38,9 @@ pasty --help
 ## Usage
 
 ```{bash}
- Usage: camlhmp-blast-region [OPTIONS]
+ Usage: camlhmp-blast-regions [OPTIONS]
 
- 🐪 camlhmp-blast-region 🐪 - Classify assemblies with a camlhmp schema using BLAST against
+ 🐪 camlhmp-blast-regions 🐪 - Classify assemblies with a camlhmp schema using BLAST against
  larger genomic regions
 
 ╭─ Options ─────────────────────────────────────────────────────────────────────────────────────╮

diff --git a/bin/pasty b/bin/pasty
@@ -3,5 +3,5 @@ pasty_dir=$(dirname $0)
 
 CAML_YAML="${pasty_dir}/../data/pa-osa.yaml" \
 CAML_TARGETS="${pasty_dir}/../data/pa-osa.fasta" \
-    camlhmp-blast-region \
+    camlhmp-blast-regions \
     "${@:1}"
diff --git a/bin/pasty-bioconda b/bin/pasty-bioconda
@@ -3,5 +3,5 @@ pasty_dir=$(dirname $0)
 
 CAML_YAML="${pasty_dir}/../share/pasty/pa-osa.yaml" \
 CAML_TARGETS="${pasty_dir}/../share/pasty/pa-osa.fasta" \
-    camlhmp-blast-region \
+    camlhmp-blast-regions \
     "${@:1}"
diff --git a/data/pa-osa.yaml b/data/pa-osa.yaml
@@ -12,6 +12,7 @@ metadata:
 # engine provides information about the tool and parameters used
 engine:
   tool: blastn # The tool used to generate the data
+  type: blast
 
 # targets provides a list of sequence targets (primers, genes, proteins, etc...)
 targets: