rsinghlab / ChromAge Public

Private repository for the chromatin age prediction project developed by Lucas and Haider.

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 885 Commits
Best_H3K4me3_results		Best_H3K4me3_results
Best_Model_Results		Best_Model_Results
Classic_Models_results		Classic_Models_results
GEO_results		GEO_results
H3K27ac		H3K27ac
H3K27me3		H3K27me3
H3K36me3		H3K36me3
H3K4me1		H3K4me1
H3K4me3		H3K4me3
H3K4me3_auto		H3K4me3_auto
H3K9me3		H3K9me3
Testing Results ElasticNet		Testing Results ElasticNet
Testing Results NN		Testing Results NN
Thesis graphs + csv		Thesis graphs + csv
annotation		annotation
encode_histone_data/human		encode_histone_data/human
python_utils		python_utils
sh_utils		sh_utils
.gitignore		.gitignore
GEO_metadata.csv		GEO_metadata.csv
GEO_metadata.xlsx		GEO_metadata.xlsx
GEO_metadata_age_copy.csv		GEO_metadata_age_copy.csv
README.md		README.md
extract_output.sh		extract_output.sh
fine_tune.sh		fine_tune.sh
histone_example.txt		histone_example.txt
input_example.txt		input_example.txt
make_bins.sh		make_bins.sh
make_plots.py		make_plots.py
metrics-output.txt		metrics-output.txt
pre-process.py		pre-process.py
raw_data_processing.py		raw_data_processing.py
ready_pipeline.sh		ready_pipeline.sh
simple_nn.py		simple_nn.py