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LIANA's development continous as LIANA+ #148

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dbdimitrov opened this issue Apr 29, 2024 · 0 comments
Open

LIANA's development continous as LIANA+ #148

dbdimitrov opened this issue Apr 29, 2024 · 0 comments

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@dbdimitrov
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dbdimitrov commented Apr 29, 2024 •
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Development of LIANA keeps going but most of the efforts are currently only in Python - to be ported also to R in the future.

Please check: https://liana-py.readthedocs.io/en/latest/
and https://github.com/saezlab/liana-py

While we work on porting LIANA+ to R, for easy conversion from R to Python, we recommend using Zellkonverter.

One can save a SingleCellExperiment object using the zellkonverter:writeH5AD function, and reload the resulting AnnData in Python

Converting from Seurat to SingleCellExperiment is also straightforward using the Seurat:as.SingleCellExperiment function.
@dbdimitrov dbdimitrov changed the title Point to LIANA+ LIANA's development continous as LIANA+ Apr 29, 2024
@dbdimitrov dbdimitrov pinned this issue Apr 29, 2024
@dbdimitrov dbdimitrov mentioned this issue Jul 10, 2024
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