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Extract and annotate type of interaction #187

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vertesy opened this issue Jan 17, 2025 · 1 comment
Open

Extract and annotate type of interaction #187

vertesy opened this issue Jan 17, 2025 · 1 comment

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@vertesy
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vertesy commented Jan 17, 2025

Dear Dev Team,

Thank you for this great package!

I am testing LIANA on my data, basing on the vignette.

From the dotplot it is clear that there are a wide range of interactions are listed together (eg secreted molecules and cell-to-cell physical binding).

  1. Is the interaction type annotated in your databases?
  2. How could I access this information?
  3. How can I subset the visualization to certain types?
  4. How can I annotate these types using your visualization tools?

Thank you!
Abel

@deeenes
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deeenes commented Jan 17, 2025

Just a note: the first 2 questions are largely addressed in saezlab/OmnipathR#118, the visualization I'm not familiar with

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