From 970e7b68617c18d054422c53013095f0776ca96b Mon Sep 17 00:00:00 2001 From: martinghunt Date: Wed, 27 Apr 2016 15:48:06 +0000 Subject: [PATCH] rename before sanity checking --- ariba/ref_preparer.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ariba/ref_preparer.py b/ariba/ref_preparer.py index dcfb7858..85cbf305 100644 --- a/ariba/ref_preparer.py +++ b/ariba/ref_preparer.py @@ -137,8 +137,8 @@ def run(self, outdir): print('\nLoading and checking input data', flush=True) refdata_outprefix = os.path.join(outdir, 'refcheck') - self.refdata.sanity_check(refdata_outprefix) self.refdata.rename_sequences(refdata_outprefix + '.rename_info') + self.refdata.sanity_check(refdata_outprefix) if self.verbose: print('\nRunning cdhit', flush=True)