diff --git a/ariba/summary_cluster_variant.py b/ariba/summary_cluster_variant.py index 51e00d95..fa9a8670 100644 --- a/ariba/summary_cluster_variant.py +++ b/ariba/summary_cluster_variant.py @@ -33,7 +33,7 @@ def _has_nonsynonymous(cls, data_dict): @classmethod def _get_het_percent(cls, data_dict): - if data_dict['gene'] == '1' or data_dict['ref_ctg_effect'] != 'SNP' or data_dict['smtls_alt_nt'] == '.' or ';' in data_dict['smtls_alt_nt']: + if data_dict['gene'] == '1' or data_dict['ref_ctg_effect'] != 'SNP' or data_dict['smtls_alt_nt'] == '.' or ';' in data_dict['smtls_alt_nt'] or data_dict['smtls_alt_depth'] == 'ND': return None else: nucleotides = [data_dict['ctg_nt']] + data_dict['smtls_alt_nt'].split(',') diff --git a/setup.py b/setup.py index 5a7e806e..4e8a8372 100644 --- a/setup.py +++ b/setup.py @@ -51,7 +51,7 @@ setup( ext_modules=[minimap_mod, fermilite_mod], name='ariba', - version='2.2.2', + version='2.2.3', description='ARIBA: Antibiotic Resistance Identification By Assembly', packages = find_packages(), package_data={'ariba': ['test_run_data/*']},