diff --git a/nf_core/pipeline-template/nextflow_schema.json b/nf_core/pipeline-template/nextflow_schema.json index e2aac58cc0..c28929b47d 100644 --- a/nf_core/pipeline-template/nextflow_schema.json +++ b/nf_core/pipeline-template/nextflow_schema.json @@ -243,10 +243,12 @@ { "$ref": "#/$defs/input_output_options" }, - {%- if igenomes %}{ + {%- if igenomes %} + { "$ref": "#/$defs/reference_genome_options" },{% endif %} - {%- if nf_core_configs %}{ + {%- if nf_core_configs %} + { "$ref": "#/$defs/institutional_config_options" },{% endif %} {