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best kmer selection #246

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fgvieira opened this issue Jun 7, 2017 · 2 comments
Open

best kmer selection #246

fgvieira opened this issue Jun 7, 2017 · 2 comments

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@fgvieira
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fgvieira commented Jun 7, 2017

Dear all,

is there a way to find what is the best kmer for a given assembly (like SPAdes)?
I think it would be a nice feature to add (even through a wrapper script) just to make life easier. it wouldn't have to search all kmers, but at least give a kmer close to the best one...

cheers,
@bastian-wur
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Tried kmergenie ;)?

@fgvieira
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Not yet... I'll give it a try.
thanks!

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@fgvieira @bastian-wur