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hackmd: link
Source repo: sourmash-bio/2024-benchmark-gather
This sample contains 177 genomes.
Benchmarking results with 64 threads (note pygather uses 1).
Notes:
These trends held across all four samples.
Indexing GTDB rs214 (400k sequences) took 4h 47m (17255 s) and 14 GB. The rocksdb index is 7 GB.
The text was updated successfully, but these errors were encountered:
fastgather
fastmultigather
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hackmd: link
gather benchmarking - sourmash v4.8.10 / branchwater plugin v0.9.5
Source repo: sourmash-bio/2024-benchmark-gather
sample SRR1976948
This sample contains 177 genomes.
Benchmarking results with 64 threads (note pygather uses 1).
Notes:
These trends held across all four samples.
rocksdb indexing of GTDB rs214
Indexing GTDB rs214 (400k sequences) took 4h 47m (17255 s) and 14 GB. The rocksdb index is 7 GB.
The text was updated successfully, but these errors were encountered: