Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add "hp" encoding #752

Closed
olgabot opened this issue Oct 22, 2019 · 1 comment
Closed

Add "hp" encoding #752

olgabot opened this issue Oct 22, 2019 · 1 comment

Comments

@olgabot
Copy link
Collaborator

olgabot commented Oct 22, 2019

HP encoding is yet another lossy encoding like Dayhoff (#689) that encodes the amino acids into a binary encoding as implemented here. Here's a little table:

Amino acid Property Dayhoff Hydrophobic-polar (hp)
C Sulfur polymerization a p
A, G, P, S, T Small b A, G, P: h S,T: p
D, E, N, Q Acid and amide c p
H, K, R Basic d p
I, L, M, V Hydrophobic e h
F, W, Y Aromatic f h
@luizirber
Copy link
Member

Implemented in #758

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants