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Ensure default values in cell params geom and biophysics #130

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pgleeson opened this issue Jul 19, 2016 · 2 comments
Open

Ensure default values in cell params geom and biophysics #130

pgleeson opened this issue Jul 19, 2016 · 2 comments

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@pgleeson
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pgleeson commented Jul 19, 2016

cm is missing here for example: https://github.com/Neurosim-lab/netpyne/blob/master/examples/HybridTut/HybridTut.py#L36

Ideally a default value should be added for each once the params are loaded in so they can always be accessed later with secs.soma.geom.cm etc.

@salvadord
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salvadord commented Jul 19, 2016

  • Ensure all of gnabar/gkbar/ena etc. set on cellRule['secs']['soma']['mechs']['hh'], or use defaults

@salvadord salvadord changed the title Ensure Ra and cm are set (to default) in cellRule['secs']['soma']['geom'] Ensure default values in cell params geom and biophysics Jul 19, 2016
@salvadord salvadord added this to the Paper (2016) milestone Sep 14, 2016
@salvadord
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add in cell.createNEURONObj() function by iterating over all params of the mech (use utils.mechVarList) and adding missing params with Neuron default value

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