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VariPred (Baseline) #1

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merdivane opened this issue May 29, 2023 · 1 comment
Open

VariPred (Baseline) #1

merdivane opened this issue May 29, 2023 · 1 comment

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@merdivane
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@merdivane
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merdivane commented May 29, 2023 •
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Paper link: https://www.biorxiv.org/content/10.1101/2023.03.16.532942v2.full.pdf
Github: https://github.com/wlin16/VariPred

This is our baseline. We will investigate different options to extend this work.
1- Adding more data modality to the current pipeline which only uses sequence information. We can add 3D structure, annotations, and nucleotide sequences or similar.
2- Applying the model to tasks such as cancer, binding affinity, or thermostability.

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@merdivane merdivane changed the title VariPred https://www.biorxiv.org/content/10.1101/2023.03.16.532942v2.full.pdf VariPred (Baseline) May 29, 2023
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