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NEWS.md

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ggmanh 1.10

New Feature

  • Added a visualization that is an extension of manhattan plot called binned manhattan plot. Instead of plotting each individual variant, the variants are binned based on position (x-axis) and log10 p-value (y-axis). More information can be found in the vignette.

  • Preprocessing function is binned_manhattan_preprocess and plotting function is binned_manhattan_plot.

Internal Changes

  • Change the way positions of the variants are calculated. MPdata now saves the unscaled positions and the scaling is done in manhattan_plot function. (this is for the x-axis)

  • To get the actual relative positions used in the manhattan plot, use calc_new_pos() on the MPdata object.

  • Gap between chromosomes can be rescaled by using chr.gap.scaling= argument inside manhattan_data_preprocess and manhattan_plot functions.

  • Now accounts for negative positions.

ggmanh 0.99

  • Added a NEWS.md file to track changes to the package.