-
Added a visualization that is an extension of manhattan plot called binned manhattan plot. Instead of plotting each individual variant, the variants are binned based on position (x-axis) and log10 p-value (y-axis). More information can be found in the vignette.
-
Preprocessing function is
binned_manhattan_preprocess
and plotting function isbinned_manhattan_plot
.
-
Change the way positions of the variants are calculated.
MPdata
now saves the unscaled positions and the scaling is done inmanhattan_plot
function. (this is for the x-axis) -
To get the actual relative positions used in the manhattan plot, use
calc_new_pos()
on theMPdata
object. -
Gap between chromosomes can be rescaled by using
chr.gap.scaling=
argument insidemanhattan_data_preprocess
andmanhattan_plot
functions. -
Now accounts for negative positions.
- Added a
NEWS.md
file to track changes to the package.