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environment.yml
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name: jupyter-template
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- accessible-pygments=0.0.4=pyhd8ed1ab_0
- alabaster=0.7.16=pyhd8ed1ab_0
- amply=0.1.6=pyhd8ed1ab_0
- annotated-types=0.7.0=pyhd8ed1ab_0
- anyio=4.3.0=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py312h98912ed_4
- argparse-dataclass=2.0.0=pyhd8ed1ab_0
- arrow=1.3.0=pyhd8ed1ab_0
- asttokens=2.4.1=pyhd8ed1ab_0
- async-lru=2.0.4=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- babel=2.14.0=pyhd8ed1ab_0
- beautifulsoup4=4.12.3=pyha770c72_0
- binutils_impl_linux-64=2.40=ha1999f0_1
- black=24.4.2=py312h7900ff3_0
- bleach=6.1.0=pyhd8ed1ab_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py312h30efb56_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.28.1=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.0=h3faef2a_0
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py312hf06ca03_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.10=haf5fa05_0
- coin-or-utils=2.11.11=hee58242_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.2.2=pyhd8ed1ab_0
- conda-inject=1.3.1=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.2.1=py312h8572e83_0
- curl=8.8.0=he654da7_0
- cycler=0.12.1=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- datrie=0.8.2=py312h98912ed_7
- debugpy=1.8.1=py312h30efb56_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.20.1=py312h7900ff3_3
- dpath=2.1.6=pyha770c72_0
- eido=0.2.2=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.6.2=h59595ed_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_2
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.52.1=py312h9a8786e_0
- fqdn=1.5.1=pyhd8ed1ab_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=13.2.0=h9eb54c0_7
- gfortran_impl_linux-64=13.2.0=h738fc78_7
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.43=pyhd8ed1ab_0
- graphite2=1.3.13=h59595ed_1003
- greenlet=3.0.3=py312h30efb56_0
- gxx_impl_linux-64=13.2.0=h2a599c4_7
- h11=0.14.0=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- harfbuzz=8.5.0=hfac3d4d_0
- hpack=4.0.0=pyh9f0ad1d_0
- httpcore=1.0.5=pyhd8ed1ab_0
- httpx=0.27.0=pyhd8ed1ab_0
- humanfriendly=10.0=pyhd8ed1ab_6
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.2=h59595ed_0
- idna=3.7=pyhd8ed1ab_0
- imagesize=1.4.1=pyhd8ed1ab_0
- immutables=0.20=py312h98912ed_1
- importlib-metadata=7.1.0=pyha770c72_0
- importlib_metadata=7.1.0=hd8ed1ab_0
- importlib_resources=6.4.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- ipykernel=6.29.3=pyhd33586a_0
- ipython=8.24.0=pyh707e725_0
- ipywidgets=8.1.2=pyhd8ed1ab_1
- isoduration=20.11.0=pyhd8ed1ab_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.4=pyhd8ed1ab_0
- json5=0.9.25=pyhd8ed1ab_0
- jsonpointer=2.4=py312h7900ff3_3
- jsonschema=4.22.0=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jsonschema-with-format-nongpl=4.22.0=pyhd8ed1ab_0
- jupyter=1.0.0=pyhd8ed1ab_10
- jupyter-book=1.0.0=pyhd8ed1ab_0
- jupyter-cache=1.0.0=pyhd8ed1ab_0
- jupyter-lsp=2.2.5=pyhd8ed1ab_0
- jupyter_client=8.6.2=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.7.2=py312h7900ff3_0
- jupyter_events=0.10.0=pyhd8ed1ab_0
- jupyter_server=2.14.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
- jupyterlab=4.2.1=pyhd8ed1ab_0
- jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
- jupyterlab_server=2.27.2=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.10=pyhd8ed1ab_0
- jupytext=1.16.2=pyhd8ed1ab_1
- kernel-headers_linux-64=2.6.32=he073ed8_17
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py312h8572e83_1
- krb5=1.21.2=h659d440_0
- latexcodec=2.0.1=pyh9f0ad1d_0
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.40=hf3520f5_1
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=22_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=22_linux64_openblas
- libcurl=8.8.0=hca28451_0
- libdeflate=1.20=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=13.2.0=hceb6213_107
- libgcc-ng=13.2.0=h77fa898_7
- libgfortran-ng=13.2.0=h69a702a_7
- libgfortran5=13.2.0=hca663fb_7
- libglib=2.80.2=hf974151_0
- libgomp=13.2.0=h77fa898_7
- libiconv=1.17=hd590300_2
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=22_linux64_openblas
- liblapacke=3.9.0=22_linux64_openblas
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_h413a1c8_0
- libpng=1.6.43=h2797004_0
- libsanitizer=13.2.0=h6ddb7a1_7
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.3=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.2.0=hceb6213_107
- libstdcxx-ng=13.2.0=hc0a3c3a_7
- libtiff=4.6.0=h1dd3fc0_3
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.7=hc051c1a_0
- libzlib=1.2.13=hd590300_5
- linkify-it-py=2.0.3=pyhd8ed1ab_0
- logmuse=0.2.6=pyh8c360ce_0
- make=4.3=hd18ef5c_1
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.5=py312h98912ed_0
- matplotlib-base=3.8.4=py312h20ab3a6_2
- matplotlib-inline=0.1.7=pyhd8ed1ab_0
- mdit-py-plugins=0.4.1=pyhd8ed1ab_0
- mdurl=0.1.2=pyhd8ed1ab_0
- mistune=3.0.2=pyhd8ed1ab_0
- munkres=1.1.4=pyh9f0ad1d_0
- mypy_extensions=1.0.0=pyha770c72_0
- myst-nb=1.1.0=pyhd8ed1ab_0
- myst-parser=2.0.0=pyhd8ed1ab_0
- nbclient=0.10.0=pyhd8ed1ab_0
- nbconvert=7.16.4=hd8ed1ab_0
- nbconvert-core=7.16.4=pyhd8ed1ab_0
- nbconvert-pandoc=7.16.4=hd8ed1ab_0
- nbformat=5.10.4=pyhd8ed1ab_0
- ncurses=6.5=h59595ed_0
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- notebook=7.2.0=pyhd8ed1ab_0
- notebook-shim=0.2.4=pyhd8ed1ab_0
- numpy=1.26.4=py312heda63a1_0
- openjpeg=2.5.2=h488ebb8_0
- openssl=3.3.0=h4ab18f5_3
- overrides=7.7.0=pyhd8ed1ab_0
- packaging=24.0=pyhd8ed1ab_0
- pandas=2.2.2=py312h1d6d2e6_1
- pandoc=3.2=ha770c72_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.52.2=ha41ecd1_0
- parso=0.8.4=pyhd8ed1ab_0
- pathspec=0.12.1=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pcre2=10.43=hcad00b1_0
- peppy=0.40.1=pyhd8ed1ab_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pillow=10.3.0=py312hdcec9eb_0
- pip=24.0=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.3=pyhd8ed1ab_0
- platformdirs=4.2.2=pyhd8ed1ab_0
- pluggy=1.5.0=pyhd8ed1ab_0
- prometheus_client=0.20.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
- prompt_toolkit=3.0.42=hd8ed1ab_0
- psutil=5.9.8=py312h98912ed_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulp=2.8.0=py312h7900ff3_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pybtex=0.24.0=pyhd8ed1ab_2
- pybtex-docutils=1.0.3=py312h7900ff3_1
- pycparser=2.22=pyhd8ed1ab_0
- pydantic=2.7.1=pyhd8ed1ab_0
- pydantic-core=2.18.2=py312h4413252_0
- pydata-sphinx-theme=0.15.2=pyhd8ed1ab_0
- pygments=2.18.0=pyhd8ed1ab_0
- pyparsing=3.1.2=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- pytest=8.2.1=pyhd8ed1ab_0
- python=3.12.3=hab00c5b_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.12=4_cp312
- pytz=2024.1=pyhd8ed1ab_0
- pyyaml=6.0.1=py312h98912ed_1
- pyzmq=26.0.3=py312h8fd38d8_0
- qtconsole-base=5.5.2=pyha770c72_0
- qtpy=2.4.1=pyhd8ed1ab_0
- r-askpass=1.2.0=r43h57805ef_0
- r-assertthat=0.2.1=r43hc72bb7e_4
- r-backports=1.5.0=r43hb1dbf0f_0
- r-base=4.3.3=hf0d99cb_1
- r-base64enc=0.1_3=r43h57805ef_1006
- r-bit=4.0.5=r43h57805ef_1
- r-bit64=4.0.5=r43h57805ef_2
- r-blob=1.2.4=r43hc72bb7e_1
- r-broom=1.0.6=r43hc72bb7e_0
- r-bslib=0.7.0=r43hc72bb7e_0
- r-cachem=1.1.0=r43hb1dbf0f_0
- r-callr=3.7.6=r43hc72bb7e_0
- r-cellranger=1.1.0=r43hc72bb7e_1006
- r-cli=3.6.2=r43ha503ecb_0
- r-clipr=0.8.0=r43hc72bb7e_2
- r-colorspace=2.1_0=r43h57805ef_1
- r-conflicted=1.2.0=r43h785f33e_1
- r-cpp11=0.4.7=r43hc72bb7e_0
- r-crayon=1.5.2=r43hc72bb7e_2
- r-curl=5.1.0=r43hf9611b0_0
- r-data.table=1.15.2=r43h029312a_0
- r-dbi=1.2.2=r43hc72bb7e_0
- r-dbplyr=2.5.0=r43hc72bb7e_0
- r-digest=0.6.35=r43ha503ecb_0
- r-dplyr=1.1.4=r43ha503ecb_0
- r-dtplyr=1.3.1=r43hc72bb7e_1
- r-ellipsis=0.3.2=r43h57805ef_2
- r-evaluate=0.23=r43hc72bb7e_0
- r-fansi=1.0.6=r43h57805ef_0
- r-farver=2.1.2=r43ha18555a_0
- r-fastmap=1.2.0=r43ha18555a_0
- r-fontawesome=0.5.2=r43hc72bb7e_0
- r-forcats=1.0.0=r43hc72bb7e_1
- r-fs=1.6.4=r43ha18555a_0
- r-gargle=1.5.2=r43h785f33e_0
- r-generics=0.1.3=r43hc72bb7e_2
- r-ggplot2=3.5.1=r43hc72bb7e_0
- r-glue=1.7.0=r43h57805ef_0
- r-googledrive=2.1.1=r43hc72bb7e_1
- r-googlesheets4=1.1.1=r43h785f33e_1
- r-gtable=0.3.5=r43hc72bb7e_0
- r-haven=2.5.4=r43ha503ecb_0
- r-highr=0.10=r43hc72bb7e_1
- r-hms=1.1.3=r43hc72bb7e_1
- r-htmltools=0.5.8.1=r43ha503ecb_0
- r-httr=1.4.7=r43hc72bb7e_0
- r-ids=1.0.1=r43hc72bb7e_3
- r-irdisplay=1.1=r43hd8ed1ab_2
- r-irkernel=1.3.2=r43h785f33e_1
- r-isoband=0.2.7=r43ha503ecb_2
- r-jquerylib=0.1.4=r43hc72bb7e_2
- r-jsonlite=1.8.8=r43h57805ef_0
- r-knitr=1.46=r43hc72bb7e_0
- r-labeling=0.4.3=r43hc72bb7e_0
- r-lattice=0.22_6=r43h57805ef_0
- r-lifecycle=1.0.4=r43hc72bb7e_0
- r-lubridate=1.9.3=r43h57805ef_0
- r-magrittr=2.0.3=r43h57805ef_2
- r-mass=7.3_60=r43h57805ef_1
- r-matrix=1.6_5=r43h316c678_0
- r-memoise=2.0.1=r43hc72bb7e_2
- r-mgcv=1.9_1=r43h316c678_0
- r-mime=0.12=r43h57805ef_2
- r-modelr=0.1.11=r43hc72bb7e_1
- r-munsell=0.5.1=r43hc72bb7e_0
- r-nlme=3.1_164=r43h61816a4_0
- r-openssl=2.2.0=r43hd7d0243_0
- r-pbdzmq=0.3_11=r43hc2df49b_0
- r-pillar=1.9.0=r43hc72bb7e_1
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