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Bastian Pfeifer

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gaborcsardi

version 2.1.6

May 1, 2015

5bdc8df · May 1, 2015

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This branch is 8 commits behind cran/PopGenome:master.

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Name		Name	Last commit message	Last commit date
APE_read.nexus.data.R		APE_read.nexus.data.R	version 2.0	Mar 17, 2013
APE_write.dna.R		APE_write.dna.R	version 2.0	Mar 17, 2013
BAYESRETURN.R		BAYESRETURN.R	version 1.2.5	Mar 17, 2013
DATA.R		DATA.R	version 2.0.3	Mar 17, 2013
DsDn.R		DsDn.R	version 2.0	Mar 17, 2013
DsPsDnPn.R		DsPsDnPn.R	version 2.0	Mar 17, 2013
Ewens_Watt.R		Ewens_Watt.R	version 1.2.0	Mar 17, 2011
GEN.R		GEN.R	version 2.1.5	May 1, 2015
GENOME.R		GENOME.R	version 2.1.5	May 1, 2015
GFF_split_into_scaffolds.R		GFF_split_into_scaffolds.R	version 2.1.5	May 1, 2015
LOAD.R		LOAD.R	version 1.2.0	Mar 17, 2011
MK.R		MK.R	version 1.2.0	Mar 17, 2011
MS.R		MS.R	version 2.1.5	May 1, 2015
MS_getStats.R		MS_getStats.R	version 1.3.0	Mar 17, 2013
PG_plot.biallelic.matrix.R		PG_plot.biallelic.matrix.R	version 1.2.5	Mar 17, 2013
PopGenread.R		PopGenread.R	version 2.0.8	Mar 17, 2013
PopGplot.R		PopGplot.R	version 2.1.0	Mar 17, 2013
PsPn.R		PsPn.R	version 2.1.5	May 1, 2015
SNPFST.R		SNPFST.R	version 1.2.3	Feb 17, 2013
VCF_split_into_scaffolds.R		VCF_split_into_scaffolds.R	version 2.1.5	May 1, 2015
Whop_readVCF.R		Whop_readVCF.R	version 2.1.5	May 1, 2015
Yach.stats.R		Yach.stats.R	version 1.2.0	Mar 17, 2011
calc.R2.R		calc.R2.R	version 1.3.0	Mar 17, 2013
calcR2.R		calcR2.R	version 2.1.5	May 1, 2015
calc_D.R		calc_D.R	version 2.0.8	Mar 17, 2013
calc_FS.R		calc_FS.R	version 2.0	Mar 17, 2013
calc_diversities.R		calc_diversities.R	version 2.1.5	May 1, 2015
calc_freqstats.R		calc_freqstats.R	version 2.1.5	May 1, 2015
calc_freqstats_FAST.R		calc_freqstats_FAST.R	version 2.1.5	May 1, 2015
calc_hwhafsth.R		calc_hwhafsth.R	version 2.1.5	May 1, 2015
calc_hwhafsth_FAST.R		calc_hwhafsth_FAST.R	version 1.2.3	Feb 17, 2013
calc_miss.R		calc_miss.R	version 2.1.5	May 1, 2015
calc_phi_st.R		calc_phi_st.R	version 2.1.5	May 1, 2015
calc_sxsfss.R		calc_sxsfss.R	version 1.2.5	Mar 17, 2013
check_init_length.R		check_init_length.R	version 1.2.0	Mar 17, 2011
checkpoppairs.R		checkpoppairs.R	version 1.2.0	Mar 17, 2011
coalsim.R		coalsim.R	version 2.1.5	May 1, 2015
codonise64.R		codonise64.R	version 2.0	Mar 17, 2013
codontable.R		codontable.R	version 2.0	Mar 17, 2013
complike.R		complike.R	version 2.1.0	Mar 17, 2013
compute_intern_achaz.R		compute_intern_achaz.R	version 1.2.0	Mar 17, 2011
concatenate.R		concatenate.R	version 2.1.5	May 1, 2015
concatenate.classes.R		concatenate.classes.R	version 1.2.5	Mar 17, 2013
concatenate.regions.R		concatenate.regions.R	version 1.2.5	Mar 17, 2013
count.unknowns.R		count.unknowns.R	version 2.1.5	May 1, 2015
counthaplotype.R		counthaplotype.R	version 2.0	Mar 17, 2013
create.PopGenome.method.R		create.PopGenome.method.R	version 1.2.0	Mar 17, 2011
csstatsClass.R		csstatsClass.R	version 1.2.0	Mar 17, 2011
decodonise64.R		decodonise64.R	version 2.0	Mar 17, 2013
delNULLpop.R		delNULLpop.R	version 1.2.0	Mar 17, 2011
deletecodongaps.R		deletecodongaps.R	version 1.2.0	Mar 17, 2011
diversity.stats.R		diversity.stats.R	version 1.2.3	Feb 17, 2013
ehh.R		ehh.R	version 2.0	Mar 17, 2013
fisherextest.R		fisherextest.R	version 2.1.5	May 1, 2015
fitting_gff.R		fitting_gff.R	version 2.0.7	Mar 17, 2013
freqtest_achaz.R		freqtest_achaz.R	version 1.2.0	Mar 17, 2011
fstcalc.R		fstcalc.R	version 2.1.5	May 1, 2015
genetree.R		genetree.R	version 1.2.0	Mar 17, 2011
get.biallelic.matrix.R		get.biallelic.matrix.R	version 1.2.5	Mar 17, 2013
get.codons.R		get.codons.R	version 2.1.0	Mar 17, 2013
get.feature.names.R		get.feature.names.R	version 2.1.6	May 1, 2015
get.individuals.R		get.individuals.R	version 1.2.5	Mar 17, 2013
get.recomb.R		get.recomb.R	version 1.2.0	Mar 17, 2011
get.sweeps.R		get.sweeps.R	version 1.2.0	Mar 17, 2011
getTable.R		getTable.R	version 1.2.0	Mar 17, 2011
get_data.R		get_data.R	version 2.1.5	May 1, 2015
get_gff_info.R		get_gff_info.R	version 2.0.9	Mar 17, 2013
get_segsites.R		get_segsites.R	version 2.1.0	Mar 17, 2013
getsyn.R		getsyn.R	version 2.1.0	Mar 17, 2013
getsynnonsyndiff.R		getsynnonsyndiff.R	version 2.1.5	May 1, 2015
gtest.R		gtest.R	version 1.2.0	Mar 17, 2011
haplochi2.r		haplochi2.r	version 2.0	Mar 17, 2013
hudsonkaplan85rm.R		hudsonkaplan85rm.R	version 2.0	Mar 17, 2013
import_export_slim.R		import_export_slim.R	version 1.2.5	Mar 17, 2013
init_coef.R		init_coef.R	version 1.2.0	Mar 17, 2011
intern.calc.R2.R		intern.calc.R2.R	version 2.1.0	Mar 17, 2013
introgression.stats.R		introgression.stats.R	version 2.0.8	Mar 17, 2013
jack.knife.transform.R		jack.knife.transform.R	version 2.1.0	Mar 17, 2013
jointfreqdist.R		jointfreqdist.R	version 1.2.0	Mar 17, 2011
jump.window.transform.R		jump.window.transform.R	version 1.2.0	Mar 17, 2011
linkdisequ.R		linkdisequ.R	version 2.1.0	Mar 17, 2013
linkdisequ_FAST.R		linkdisequ_FAST.R	version 2.1.0	Mar 17, 2013
locstatsClass.R		locstatsClass.R	version 1.2.0	Mar 17, 2011
mismatch.R		mismatch.R	version 1.2.0	Mar 17, 2011
mktest.R		mktest.R	version 2.0	Mar 17, 2013
mult.linkage.stats.R		mult.linkage.stats.R	version 1.2.5	Mar 17, 2013
myReadVCF.R		myReadVCF.R	version 2.0.8	Mar 17, 2013
my_math.R		my_math.R	version 1.2.5	Mar 17, 2013
my_rdirichlet.R		my_rdirichlet.R	version 1.2.0	Mar 17, 2011
my_read.nexus.R		my_read.nexus.R	version 2.0	Mar 17, 2013
my_unique.R		my_unique.R	version 1.2.0	Mar 17, 2011
neuttest.R		neuttest.R	version 1.2.0	Mar 17, 2011
pair_linkdisequ.R		pair_linkdisequ.R	version 1.2.0	Mar 17, 2011
pair_linkdisequ_FAST.R		pair_linkdisequ_FAST.R	version 1.2.5	Mar 17, 2013
parse_HapMap.R		parse_HapMap.R	version 1.2.3	Feb 17, 2013
parse_gff.R		parse_gff.R	version 2.1.5	May 1, 2015
permute.R		permute.R	version 1.2.0	Mar 17, 2011
plot_cs.R		plot_cs.R	version 1.2.0	Mar 17, 2011
polymorph.R		polymorph.R	version 1.2.0	Mar 17, 2011
popgen.R		popgen.R	version 2.1.5	May 1, 2015
probabilities.R		probabilities.R	version 2.1.5	May 1, 2015
progress.R		progress.R	version 1.2.0	Mar 17, 2011
read.big.fasta.R		read.big.fasta.R	version 2.1.5	May 1, 2015
read.big.ms.output.R		read.big.ms.output.R	version 1.3.0	Mar 17, 2013
read.ms.output.R		read.ms.output.R	version 1.2.5	Mar 17, 2013
readData.R		readData.R	version 2.1.5	May 1, 2015
readHapMap.R		readHapMap.R	version 2.1.5	May 1, 2015
readMS.R		readMS.R	version 1.3.0	Mar 17, 2013
readSNP.R		readSNP.R	version 2.1.5	May 1, 2015
readVCF.R		readVCF.R	version 2.1.5	May 1, 2015
readVCFchunk.R		readVCFchunk.R	version 2.0.8	Mar 17, 2013
readVCFchunkHap.R		readVCFchunkHap.R	version 1.2.3	Feb 17, 2013
recomb.stats.R		recomb.stats.R	version 1.2.0	Mar 17, 2011
region.as.fasta.R		region.as.fasta.R	version 2.1.5	May 1, 2015
save_load_GENOME.R		save_load_GENOME.R	version 2.0.8	Mar 17, 2013
set.outgroup.R		set.outgroup.R	version 1.2.5	Mar 17, 2013
set.ref.positions.R		set.ref.positions.R	version 1.2.0	Mar 17, 2011
set.synnonsyn.R		set.synnonsyn.R	version 2.1.5	May 1, 2015
set_gff_info.R		set_gff_info.R	version 2.0.9	Mar 17, 2013
site_FST.R		site_FST.R	version 2.1.0	Mar 17, 2013
slide.snp.sep.R		slide.snp.sep.R	version 1.2.0	Mar 17, 2011
sliding.window.transform.fast.R		sliding.window.transform.fast.R	version 1.2.3	Feb 17, 2013
sliding.window.transform.new.R		sliding.window.transform.new.R	version 2.1.5	May 1, 2015
slidingWindow.R		slidingWindow.R	version 1.2.0	Mar 17, 2011
slim.R		slim.R	version 2.1.5	May 1, 2015
snn.R		snn.R	version 1.2.3	Feb 17, 2013
sortmatrix.R		sortmatrix.R	version 2.0	Mar 17, 2013
split.GFF.R		split.GFF.R	version 2.1.5	May 1, 2015
split_data_into_GFF_attributes.R		split_data_into_GFF_attributes.R	version 2.1.6	May 1, 2015
splitting.data.R		splitting.data.R	version 2.1.5	May 1, 2015
splitting.data.sep.R		splitting.data.sep.R	version 2.1.0	Mar 17, 2013
sweeps.stats.R		sweeps.stats.R	version 2.1.0	Mar 17, 2013
testparamsClass.R		testparamsClass.R	version 1.2.0	Mar 17, 2011
tn93.R		tn93.R	version 1.2.0	Mar 17, 2011
update_slim.R		update_slim.R	version 2.1.5	May 1, 2015
wall99bq.R		wall99bq.R	version 2.1.0	Mar 17, 2013
zzz.R		zzz.R	version 1.2.0	Mar 17, 2011
View all files