NAMESPACE

# Generated by roxygen2: do not edit by hand

export("factorNames<-")
export("featureNames<-")
export("sampleNames<-")
export("viewNames<-")
export(calculateVarianceExplained)
export(clusterSamples)
export(compareFactors)
export(compareModels)
export(createMOFAobject)
export(factorNames)
export(featureNames)
export(getCovariates)
export(getDefaultDataOptions)
export(getDefaultModelOptions)
export(getDefaultTrainOptions)
export(getDimensions)
export(getELBO)
export(getExpectations)
export(getFactors)
export(getImputedData)
export(getTrainData)
export(getWeights)
export(impute)
export(loadModel)
export(makeExampleData)
export(plotDataHeatmap)
export(plotDataOverview)
export(plotDataScatter)
export(plotEnrichment)
export(plotEnrichmentBars)
export(plotEnrichmentHeatmap)
export(plotFactorBeeswarm)
export(plotFactorCor)
export(plotFactorHist)
export(plotFactorScatter)
export(plotFactorScatters)
export(plotTopWeights)
export(plotVarianceExplained)
export(plotWeights)
export(plotWeightsHeatmap)
export(predict)
export(prepareMOFA)
export(qualityControl)
export(runEnrichmentAnalysis)
export(runMOFA)
export(sampleNames)
export(selectModel)
export(subsetFactors)
export(subsetSamples)
export(subsetViews)
export(trainCurveELBO)
export(trainCurveFactors)
export(viewNames)
exportClasses(MOFAmodel)
exportMethods("factorNames<-")
exportMethods("featureNames<-")
exportMethods("sampleNames<-")
exportMethods("viewNames<-")
exportMethods(factorNames)
exportMethods(featureNames)
exportMethods(sampleNames)
exportMethods(viewNames)
import(MultiAssayExperiment)
import(RColorBrewer)
import(doParallel)
import(dplyr)
import(foreach)
import(ggbeeswarm)
import(ggplot2)
import(ggrepel)
import(grDevices)
import(methods)
import(pheatmap)
import(reshape2)
import(reticulate)
import(scales)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,phenoData)
importFrom(corrplot,corrplot)
importFrom(cowplot,plot_grid)
importFrom(grDevices,colorRampPalette)
importFrom(pheatmap,pheatmap)
importFrom(rhdf5,h5read)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,pnorm)
importFrom(stats,pt)
importFrom(stats,rbinom)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,var)
importFrom(stats,wilcox.test)
importFrom(utils,head)
importFrom(utils,tail)