Dockerfile

FROM rocker/shiny-verse

MAINTAINER Isaac Caruso <icaruso21@amherst.edu>

RUN apt-get update \
  && apt-get install -y --no-install-recommends \
    libudunits2-dev \
    libpoppler-cpp-dev \
    libgdal-dev \
    libproj-dev \ 
    tcl \
    tk

RUN R -e "devtools::install_github('rstudio/shiny')"
RUN R -e "devtools::install_github('ropensci/USAboundariesData')"

RUN install2.r --error \
    rnoaa \
    plotly \
    lubridate \
    zoo \
    shinyWidgets \
    shinycssloaders \
    shinytoastr \
    mathjaxr \
    leaflet \
    mosaic \
    taxize \
    raster \
    rasterVis \
    hash \
    rgdal \
    shinyalert \
    shinyglide \
    cicerone \
    aws.s3 \
    reshape2 \
    tidyr \
    ggplot2 \
    pdftools \
    ggridges \
    magrittr \
    shinyBS \
    data.table \
    shinyjs \
    shinythemes \
    shinyWidgets \
    maps \
    ncdf4 \
    sf \
    RCurl \
    utils \
    humidity \
    RNCEP \ 
    elevatr \
    DT \
    DataExplorer
   # USAboundariesData
   # MALDIquant \
   # GEOquery
    

# RUN R -e "install.packages(pkgs=c('shiny', 'tidyverse', 'rnoaa', 'plotly', 'lubridate', 'zoo', 'shinyWidgets', 'shinycssloaders', 'shinytoastr', 'mathjaxr', 'leaflet', 'mosaic', 'taxize', 'raster', 'rasterVis', 'hash', 'rgdal', 'shinyalert', 'shinyglide', 'cicerone'), repos='https://cran.rstudio.com/')" 
# RUN R -e "install.packages(pkgs=c('aws.s3', 'reshape2', 'tidyr', 'ggplot2', 'pdftools', 'ggridges', 'magrittr', 'shinyBS', 'data.table', 'shinyjs', 'shinysky', 'shinythemes', 'shinyWidgets', 'maps'), repos='https://cran.rstudio.com/')"

RUN R -e "devtools::install_github('ColinFay/glouton')"
RUN R -e "devtools::install_github('AnalytixWare/ShinySky')"
RUN R -e "devtools::install_github('carlganz/shinyCleave')"
RUN R -e "devtools::install_github('dreamRs/shinypop')"
RUN R -e "devtools::install_github('JohnCoene/shinyscroll')"
RUN R -e "devtools::install_github('mikejohnson51/AOI')"
RUN R -e "devtools::install_github('mikejohnson51/climateR')"
RUN R -e "devtools::install_github('seandavi/GEOquery')"
RUN R -e "devtools::install_github('sgibb/MALDIquant')"
RUN R -e "devtools::install_github('mrke/NicheMapR')"
RUN R -e "devtools::install_github('ilyamaclean/microclima')"