Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Input dimension Error #47

Open
BruggenLab opened this issue Jun 28, 2023 · 0 comments
Open

Input dimension Error #47

BruggenLab opened this issue Jun 28, 2023 · 0 comments

Comments

@BruggenLab
Copy link

Hi,
I am trying to use the imagej plugin and segment my nuclei image but I get the following error. I will be happy if you could help me.

(Fiji Is Just) ImageJ 2.9.0/1.53t; Java 1.8.0_202 [64-bit]; Mac OS X 10.16; 201MB of 17497MB (1%)

org.vanvalenlab.exceptions.KioskJobFailedException: Traceback (most recent call last):
File "/usr/src/app/redis_consumer/consumers/base_consumer.py", line 201, in consume
status = self._consume(redis_hash)
File "/usr/src/app/redis_consumer/consumers/segmentation_consumer.py", line 160, in _consume
image = self.image_dimensions_to_bxyc(dim_order, image)
File "/usr/src/app/redis_consumer/consumers/segmentation_consumer.py", line 93, in image_dimensions_to_bxyc
raise ValueError('Input dimension order was {} but input '
ValueError: Input dimension order was but input image has shape (1460, 1936, 3)
at org.vanvalenlab.KioskJobManager.runJob(KioskJobManager.java:158)
at org.vanvalenlab.ImageJobManager.run(ImageJobManager.java:33)
at ij.IJ.runUserPlugIn(IJ.java:237)
at ij.IJ.runPlugIn(IJ.java:203)
at ij.Executer.runCommand(Executer.java:152)
at ij.Executer.run(Executer.java:70)
at java.lang.Thread.run(Thread.java:748)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant