.vite cache cannot be refreshed after yarn upgrade module in local filesystem

[qyb]

Describe the bug

I use a developing module in my local folder and add it in the vite-project's package.json as "file:path" syntax.

When I update my module, then run yarn upgrade module-name in the vite-project. Yarn will update node_modules/module-name as my expected, but node_modules/.vite/deps won't be updated.

It's a Windows10/WSL1/Ubuntu22.04 env. Looks similar #7176

Reproduction

https://github.com/qyb/bugforvite

System Info

System:
    OS: Linux 4.4 Ubuntu 22.04 LTS 22.04 LTS (Jammy Jellyfish)
    CPU: (8) x64 Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
    Memory: 15.96 GB / 31.92 GB
    Container: Yes
    Shell: 5.1.16 - /bin/bash
  Binaries:
    Node: 16.14.2 - ~/node-v16.14.2-linux-x64/bin/node
    Yarn: 1.22.15 - ~/node-v16.14.2-linux-x64/bin/yarn
    npm: 8.5.0 - ~/node-v16.14.2-linux-x64/bin/npm

Used Package Manager

yarn

Logs

No response

Validations

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• Read the Contributing Guidelines.
• Read the docs.
• Check that there isn't already an issue that reports the same bug to avoid creating a duplicate.
• Make sure this is a Vite issue and not a framework-specific issue. For example, if it's a Vue SFC related bug, it should likely be reported to vuejs/core instead.
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• The provided reproduction is a minimal reproducible example of the bug.

[runlong-yao]

the same issue
steps:
1、
npm install from local package
or
npm link package

2、
use the api in package and the page will not update

[bluwy]

I think this is a duplicate of #6718. Ideally we would resolve each dependency before optimization and compare them to bust the cache, but we skipped that currently.