README.md

get_NCBI_genomes

This script allows downloaded from NCBI genome in fasta format and / or gff

This script has been tested on linux, ubuntu, and MacOS, and assumes that an internet connection and it is installed wget.

for help: perl get_NCBI_genome.pl -h perl get_NCBI_genome.pl --help

example exec:

without downloading, only shows the genomes available for taxaid: 10090

perl bin/Perl/get_NCBI_genome.pl -t 10090 --only_show

Download the complete genomes of musculus organism in gff format.

perl bin/Perl/get_NCBI_genome.pl -o "musculus" --execute --only_show -f gff