DESCRIPTION

Package: lrRNAseqBenchmark
Type: Package
Title: Figure out how to call varaints from Iso-Seq data
Version: 0.1.0
Author: c( person("Vladimir", "Souza", role=c("aut", "cre"), email="vladimir.souza@mls.uzh.ch"),
           person("Mark", "Robinson", role = "aut", email = "mark.robinson@imls.uzh.ch"),
           person("Gloria", "Sheynkman", role = "aut", email = "gs9yr@virginia.edu"),
           person("Elizabeth", "Tseng", role = "aut", email = "etseng@pacificbiosciences.com") )
           person("Ben", "Jordan", role = "aut", email = "bj8th.uva@gmail.com") )
Maintainer: Vladimir Souza <vladimir.souza@mls.uzh.ch>
Description: Use ground-truth VCF files genereted from short-read data to compare and validate VCF files generated from different variant callers on Iso-Seq data.
Depends: R (>= 4.0)
Imports:
  dplyr,
  rlang,
  BiocParallel,
  GenomicAlignments,
  Rsamtools,
  IRanges,
  S4Vectors,
  snakecase,
  ggplot2,
  tibble,
  tidyr,
  vcfR,
  GenomicRanges,
  stringr,
  Biostrings,
  XVector
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
URL: https://github.com/vladimirsouza/lrRNAseqBenchmark
BugReports: https://github.com/vladimirsouza/lrRNAseqBenchmark/issues