diff --git a/resistingrhythm/analysis/fig1.key b/resistingrhythm/analysis/fig1.key index 06b65c7..253e321 100755 Binary files a/resistingrhythm/analysis/fig1.key and b/resistingrhythm/analysis/fig1.key differ diff --git a/resistingrhythm/analysis/paper_figures_v4.Rmd b/resistingrhythm/analysis/paper_figures_v4.Rmd index aea246a..85d7d54 100644 --- a/resistingrhythm/analysis/paper_figures_v4.Rmd +++ b/resistingrhythm/analysis/paper_figures_v4.Rmd @@ -372,7 +372,7 @@ bind_rows(results220, results222) %>% group_by(synapse, osc_rate) %>% mutate(M=mean(kappa_coord), SD=sd(kappa_coord)) %>% ggplot(mapping=aes(x=osc_rate, y=M, group=osc_rate, color=synapse)) + - geom_point(size=0.8) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=osc_rate, ymin=M - SD, ymax=M + SD, color=synapse), width=.15, size=0.2) + scale_color_manual(values=c("black", "grey")) + @@ -389,7 +389,7 @@ bind_rows(results221, results223) %>% group_by(synapse, osc_rate) %>% mutate(M=mean(kappa_coord), SD=sd(kappa_coord)) %>% ggplot(mapping=aes(x=osc_rate, y=M, group=osc_rate, color=synapse)) + - geom_point(size=0.8) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=osc_rate, ymin=M - SD, ymax=M + SD, color=synapse), width=.15, size=0.2) + scale_color_manual(values=c("black", "grey")) + @@ -406,7 +406,7 @@ bind_rows(results220, results222) %>% group_by(synapse, osc_rate) %>% mutate(M=mean(rate_k), SD=sd(rate_k)) %>% ggplot(mapping=aes(x=osc_rate, y=M, group=osc_rate, color=synapse)) + - geom_point(size=0.8) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=osc_rate, ymin=M - SD, ymax=M + SD, color=synapse), width=.15, size=0.2) + scale_color_manual(values=c("black", "grey")) + @@ -425,7 +425,7 @@ bind_rows(results221, results223) %>% group_by(synapse, osc_rate) %>% mutate(M=mean(rate_k), SD=sd(rate_k)) %>% ggplot(mapping=aes(x=osc_rate, y=M, group=osc_rate, color=synapse)) + - geom_point(size=0.8) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=osc_rate, ymin=M - SD, ymax=M + SD, color=synapse), width=.15, size=0.2) + scale_color_manual(values=c("black", "grey"), name="Tonic") + @@ -446,7 +446,7 @@ bind_rows(results224, results227) %>% group_by(synapse, osc_rate) %>% mutate(M=mean(kappa_coord), SD=sd(kappa_coord)) %>% ggplot(mapping=aes(x=osc_rate, y=M, group=osc_rate, color=synapse)) + - geom_point(size=0.8) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=osc_rate, ymin=M - SD, ymax=M + SD, color=synapse), width=.15, size=0.2) + scale_color_manual(values=c("darkgoldenrod3", "goldenrod1")) + @@ -463,7 +463,7 @@ bind_rows(results224, results227) %>% group_by(synapse, osc_rate) %>% mutate(M=mean(rate_k), SD=sd(rate_k)) %>% ggplot(mapping=aes(x=osc_rate, y=M, group=osc_rate, color=synapse)) + - geom_point(size=0.8) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=osc_rate, ymin=M - SD, ymax=M + SD, color=synapse), width=.15, size=0.2) + scale_color_manual(values=c("darkgoldenrod3", "goldenrod1"), name="Burst") + @@ -471,7 +471,7 @@ bind_rows(results224, results227) %>% lims(y=c(0.0, 180.0)) + theme_classic2() + theme( - legend.position = c(1.35, .5), + legend.position = c(1.5, -1.25), legend.title = element_text(colour = 'darkgoldenrod3'), legend.background = element_rect(colour ="black"), legend.key.size = unit(.5, "cm"), @@ -516,14 +516,14 @@ p11 <- textGrob("Excitability") # - layout_matrix <- rbind( c(NA, 8, 8, 8, NA, 9, 9, 9, 9, 9, 9, NA, NA), - c(11, 3, 3, 3, NA, 4, 4, 4, 6, 6, 6, NA, NA), - c(11, 3, 3, 3, NA, 4, 4, 4, 6, 6, 6, NA, NA), - c(11, 3, 3, 3, NA, 4, 4, 4, 6, 6, 6, NA, NA), + c(11, 3, 3, 3, NA, 4, 4, 4, 6, 6, 6, 7, 7), + c(11, 3, 3, 3, NA, 4, 4, 4, 6, 6, 6, 7, 7), + c(11, 3, 3, 3, NA, 4, 4, 4, 6, 6, 6, 7, 7), c(11, 3, 3, 3, NA, 4, 4, 4, 6, 6, 6, 7, 7), c(10, 1, 1, 1, NA, 2, 2, 2, 5, 5, 5, 7, 7), - c(10, 1, 1, 1, NA, 2, 2, 2, 5, 5, 5, 7, 7), - c(10, 1, 1, 1, NA, 2, 2, 2, 5, 5, 5, 7, 7), - c(10, 1, 1, 1, NA, 2, 2, 2, 5, 5, 5, 7, 7) + c(10, 1, 1, 1, NA, 2, 2, 2, 5, 5, 5, NA, NA), + c(10, 1, 1, 1, NA, 2, 2, 2, 5, 5, 5, NA, NA), + c(10, 1, 1, 1, NA, 2, 2, 2, 5, 5, 5, NA, NA) ) grid.arrange(p1, p2, p3, p4, p5, p6, p7, p8, p9, p10, p11, layout_matrix=layout_matrix) @@ -563,7 +563,7 @@ tmp2$mode <- rep("Homeostatsis", nrow(tmp2)) # Kappa bind_rows(tmp1, tmp2) %>% ggplot(mapping=aes(x=M_kappa, y=M_error, color=mode)) + - geom_point(size=0.2) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=M_kappa, ymin=M_error - SD_error, ymax=M_error + SD_error), width=0.004, size=0.2) + geom_errorbarh(mapping=aes(y=M_error, xmin=M_kappa - SD_kappa, xmax=M_kappa + SD_kappa), @@ -615,7 +615,7 @@ tmp2$mode <- rep("Homeostatsis", nrow(tmp2)) # Kappa bind_rows(tmp1, tmp2) %>% ggplot(mapping=aes(x=M_kappa, y=M_error, color=mode)) + - geom_point(size=0.2) + + geom_point(size=1.25) + geom_errorbar(mapping=aes(x=M_kappa, ymin=M_error - SD_error, ymax=M_error + SD_error), width=0.004, size=0.2) + geom_errorbarh(mapping=aes(y=M_error, xmin=M_kappa - SD_kappa, xmax=M_kappa + SD_kappa), @@ -719,7 +719,7 @@ rbind(results231, results232) %>% geom_boxplot(size=0.6) + stat_compare_means(method="wilcox.test", label="p.signif", label.x=1.3, size=3, show.legend=FALSE) + - labs(title="c.", y="Pop. rate", x=TeX("$t_{oscillation} / \\tau_{homeostasis}$")) + + labs(title="c.", y="Pop. rate", x=TeX("$t_{oscillation} / \\tau_{h}$")) + scale_color_manual(values=c("black", "grey"), name=NA) + theme_classic2() + theme(