DESCRIPTION

Package: TENxIO
Type: Package
Title: Import methods for 10X Genomics files
Version: 1.9.4
Authors@R:
  person(
    "Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu",
    c("aut", "cre"), c(ORCID = "0000-0002-3242-0582")
  )
Depends: R (>= 4.2.0), SingleCellExperiment, SummarizedExperiment
Imports:
  BiocBaseUtils,
  BiocGenerics,
  BiocIO,
  GenomeInfoDb,
  GenomicRanges,
  HDF5Array,
  Matrix,
  MatrixGenerics,
  methods,
  RCurl,
  readr,
  rhdf5,
  R.utils,
  S4Vectors,
  utils
Suggests:
  BiocStyle,
  DropletTestFiles,
  ExperimentHub,
  knitr,
  RaggedExperiment (>= 1.29.5),
  rmarkdown,
  Rsamtools,
  tinytest
Description: Provides a structured S4 approach to importing data files from
  the 10X pipelines. It mainly supports Single Cell Multiome ATAC + Gene
  Expression data among other data types. The main Bioconductor data
  representations used are SingleCellExperiment and RaggedExperiment.
biocViews: Software, Infrastructure, DataImport, SingleCell
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
BugReports: https://github.com/waldronlab/TENxIO/issues
URL: https://github.com/waldronlab/TENxIO
Collate: 
    'TENxFile-class.R'
    'TENxFileList-class.R'
    'TENxFragments-class.R'
    'TENxH5-class.R'
    'TENxIO-package.R'
    'TENxMTX-class.R'
    'TENxPeaks-class.R'
    'TENxTSV-class.R'
    'utils.R'
Date: 2024-12-05