pyproject.toml

[build-system]
requires = ["setuptools>=61", "wheel", "setuptools_scm[toml]>=3.4"]
build-backend = "setuptools.build_meta"

[project]
name = "ppx"
authors = [{name = "William E. Fondrie", email = "fondriew@gmail.com"}]
description = "A Python interface to proteomics data repostitories."
license = {text = "Apache 2.0"}
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: OS Independent",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
requires-python = ">=3.10"
dependencies = [
    "requests>=2.23.0",
    "tqdm>=4.60.0",
    "cloudpathlib[all]>=0.7.1",
]
dynamic = ["version"]

[project.readme]
file = "REAMDE.md"
content-type = "text/markdown"

[project.urls]
Homepage = "https://github.com/wfondrie/ppx"
Documentation = "https://ppx.readthedocs.io"

[project.optional-dependencies]
docs = [
    "numpydoc>=1.0.0",
    "sphinx-argparse>=0.2.5",
    "sphinx-rtd-theme>=0.5.0",
    "nbsphinx>=0.7.1",
    "ipykernel>=5.3.0",
    "recommonmark>=0.5.0",
]
dev = [
    "pre-commit>=2.7.1"
]

[project.scripts]
ppx = "ppx.ppx:main"

[tool.setuptools]
include-package-data = false

[tool.setuptools.packages]
find = {namespaces = false}

[tool.setuptools_scm]

[tool.ruff]
line-length = 79
target-version = "py310"

[tool.ruff.lint]
select = ["E", "F", "W", "C", "I", "D", "UP", "N", "T20"]

# ANN101 Missing type annotation for `self` in method
# D213 Multi-line docstring summary should start at the second lin
# D203 1 blank line required before class docstring
# D100 Missing docstring in public module
# ANN102 Missing type annotation for `cls` in classmethod
# D401 First line of docstring should be in imperative mood
ignore = ["D213", "ANN", "D203", "D100", "D401", "D404", "D400", "D415"]

[tool.ruff.lint.per-file-ignores]
"*tests/*.py" = ["ANN", "N806", "D102", "D205"]
"__init__.py" = ["F401", "D104"]
"docs/*.py" = ["F", "E"]