Error correcting raw reads

[jagos01]

I am trying to correct some nanopore reads. My config file is called BaS_LR.txt and the following lings were modified:

PROJECT=BaS_LR
ONT_READ_LIST=BaS_LR_Seq.txt
GENOME_SIZE=5409120
THREADS=12
MIN_READ_LENGTH=500

BaS_LR.txt contains one line:
/home/data/MinION/HybridAssembly/BaS_S_L/Analysis/BaS_Guppy_merged_Porechop.fastq
which is a single fastq file containing all my reads (207,000).

The following is output when I run necat.pl correct BaS_LR.txt :

Smartmatch is experimental at /home/NECAT/Linux-amd64/bin/Plgd/Project.pm line 232.
2019-03-31 20:38:29 [Info] Start correcting rawreads.
2019-03-31 20:38:29 [Info] Start filtering rawreads for consensus.
2019-03-31 20:38:29 [Info] Run script: /home/data/MinION/HybridAssembly/BaS_S_L/Analysis/NECAT/BaS_LR/scripts/cns_pprr.sh 2>&1 |tee /home/data/MinION/HybridAssembly/BaS_S_L/Analysis/NECAT/BaS_LR/scripts/cns_pprr.sh.log
[Sun Mar 31 20:43:36 2019] ERROR: File '' does not exist (common/packed_db.c, 68)
[Sun Mar 31 20:38:29 2019] INFO: process fastq file /home/data/MinION/HybridAssembly/BaS_S_L/Analysis/BaS_Guppy_merged_Porechop.fastq (preprocess_raw_reads/main.c, 57)
2019-03-31 20:43:36 [Error] Failed to run script, 1, /home/data/MinION/HybridAssembly/BaS_S_L/Analysis/NECAT/BaS_LR/scripts/cns_pprr.sh

I am not sure how to correct these errors. Any help would be appreciated.
Thanks,
Scott

[xiaochuanle]

I guess your BaS_LR.txt contains two lines. But the second is an empty line. To validate this, please run the following command

$ wc -l BaS_LR.txt

If the output is something like

2 Bas_LR.txt

Then you should delete the second empty line.

[jagos01]

There was an empty line. Thank you for your help.