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Plasmid loss #28

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liweicheng0011 opened this issue Dec 9, 2020 · 0 comments
Open

Plasmid loss #28

liweicheng0011 opened this issue Dec 9, 2020 · 0 comments

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@liweicheng0011
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Hello, I have measured the bacterial genome with nanopore sequencing platform and assembled the genome with NECAT software. Use BUSCO software to evaluate necAT software assembly results over CANU software. But I found a problem with the assembly result of the NECAT software missing multiple plasmids. Plasmids play a non-negligible role in the bacterial genome. Can I avoid plasmids loss by adjusting the software parameters?
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