Question

[yzhang-github-pub]

Dear Authors,

Thanks for developing necat which seems to be a great tool. I plan to try it for nanopore amplicon sequence data. To get correct settings, I'd like to understand the options in config. For example, what do these options mean:

OVLP_FAST_OPTIONS="-n 500 -z 20 -b 2000 -e 0.5 -j 0 -u 1 -a 1000"
OVLP_SENSITIVE_OPTIONS="-n 500 -z 10 -e 0.5 -j 0 -u 1 -a 1000"
CNS_FAST_OPTIONS="-a 2000 -x 4 -y 12 -l 1000 -e 0.5 -p 0.8 -u 0"
CNS_SENSITIVE_OPTIONS="-a 2000 -x 4 -y 12 -l 1000 -e 0.5 -p 0.8 -u 0"
TRIM_OVLP_OPTIONS="-n 100 -z 10 -b 2000 -e 0.5 -j 1 -u 1 -a 400"
ASM_OVLP_OPTIONS="-n 100 -z 10 -b 2000 -e 0.5 -j 1 -u 0 -a 400"

Thanks!