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NUM_ITER #55

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theo-allnutt-bioinformatics opened this issue Jul 18, 2023 · 1 comment
Open

NUM_ITER #55

theo-allnutt-bioinformatics opened this issue Jul 18, 2023 · 1 comment

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@theo-allnutt-bioinformatics
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What is NUM_ITER in the config file?

Thanks.
@lemene
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lemene commented Aug 4, 2023

NECAT correction method involves two steps. First, it correct the low-error-rate subsequences in a read. Then, it correct the high-error-rate subsequences. in that read using a more sensitive approach. So NUM_ITER is fixed to 2.

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@lemene @theo-allnutt-bioinformatics