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CMakeLists.txt.bak
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####################################################################
# CMake Build Script for the libstructural project
#
# Author: Frank T. Bergmann
#
cmake_minimum_required(VERSION 2.8)
project(LibStructural)
if(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
set (CMAKE_INSTALL_PREFIX "${CMAKE_SOURCE_DIR}/install_x64" CACHE PATH "default install path" FORCE)
endif()
include (CMakeTestCCompiler)
include (CheckCSourceCompiles)
include (CheckCXXSourceCompiles)
include (CheckStructHasMember)
include (CheckLibraryExists)
include (CheckFunctionExists)
include (CheckCCompilerFlag)
include (CheckCSourceRuns)
include (CheckSymbolExists)
include (CheckTypeSize)
####################################################################
# Set up version information, it might be better to just write it here
# rather than parsing VERSION.txt
SET(STRUCTURAL_VERSION_MAJOR 1)
SET(STRUCTURAL_VERSION_MINOR 1)
SET(STRUCTURAL_VERSION_PATCH 0)
SET(STRUCTURAL_VERSION_RELEASE "-a1")
SET(STRUCTURAL_VERSION_NUMERIC 50000)
SET(PACKAGE_VERSION "${STRUCTURAL_VERSION_MAJOR}.${STRUCTURAL_VERSION_MINOR}.${STRUCTURAL_VERSION_PATCH}${STRUCTURAL_VERSION_RELEASE}")
####################################################################
#
# the next lines configure the parameters for packaging the binaries
# they can be invoked with: make package / nmake package or by using
# cpack -G zip|deb|rpm|dmg|nsis
#
INCLUDE(InstallRequiredSystemLibraries)
SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "The LibStructural Library")
SET(CPACK_PACKAGE_NAME "LibStruct")
SET(CPACK_PACKAGE_VENDOR "The SBW Team")
SET(CPACK_PACKAGE_CONTACT "SBW Team <[email protected]>")
SET(CPACK_PACKAGE_VERSION_MAJOR "${STRUCTURAL_VERSION_MAJOR}")
SET(CPACK_PACKAGE_VERSION_MINOR "${STRUCTURAL_VERSION_MINOR}")
SET(CPACK_PACKAGE_VERSION_PATCH "${STRUCTURAL_VERSION_PATCH}")
INCLUDE(CPack)
# Configuration options
set (ENABLE_PYTHON_WRAPPER FALSE CACHE BOOL "Enable Python bindings")
# Target 64 bit generation
set (CMAKE_GENERATOR_PLATFORM "Win64")
# set build type default
set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Choose the type of build, options are: None (CMAKE_CXX_FLAGS or CMAKE_C_FLAGS are used), Debug, Release, RelWithDebInfo, MinSizeRel" FORCE )
###############################################################################
#
# list of additional files to link against.
#
set(EXTRA_LIBS ${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib/libbz2.lib; ${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib/libxml2.lib; ${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib/zdll.lib; ${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib/libiconv.lib CACHE STRING "List of additional libraries to link against." )
####################################################################
#
# Locate Libxml2 if needed
#
find_library(LIBSBML_LIBRARY
NAMES libsbml-static.a libsbml-static.lib libsbml.lib sbml
PATHS ${DEPENDENCY_DIR}/lib
${SBML_DIR}/lib
/usr/lib /usr/local/lib
${CMAKE_SOURCE_DIR}
${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib
)
find_path(LIBSBML_INCLUDE
NAMES sbml/SBase.h
PATHS ${DEPENDENCY_DIR}/include
${SBML_DIR}/include
/usr/include /usr/local/include
${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/include
)
set(STRUCTURAL_LIBS ${STRUCTURAL_LIBS} ${LIBSBML_LIBRARY})
include_directories(${LIBSBML_INCLUDE})
set(STRUCTURAL_LIBS ${STRUCTURAL_LIBS} ${LIBSBML_LIBRARY})
find_library(CLAPACK_LIBRARY
NAMES liblapack.a clapack.lib clapack lapack
PATHS /usr/lib /usr/local/lib
${CMAKE_SOURCE_DIR}
${CMAKE_SOURCE_DIR}/dependencies/third-party/clapack/3.2.1/LIB
${CMAKE_SOURCE_DIR}/lib
)
set(CLAPACK_LIBS ${CLAPACK_LIBRARY})
find_library(CLAPACK_BLAS_LIBRARY
NAMES libblas.a blas.lib blas
PATHS /usr/lib /usr/local/lib
${CMAKE_SOURCE_DIR}
${CMAKE_SOURCE_DIR}/dependencies/third-party/clapack/3.2.1/LIB
${CMAKE_SOURCE_DIR}/lib
)
set(CLAPACK_LIBS ${CLAPACK_LIBS} ${CLAPACK_BLAS_LIBRARY})
find_library(CLAPACK_F2C_LIBRARY
NAMES libf2c.a libf2c.lib f2c
PATHS /usr/lib /usr/local/lib
${CMAKE_SOURCE_DIR}
${CMAKE_SOURCE_DIR}/dependencies/third-party/clapack/3.2.1/LIB
${CMAKE_SOURCE_DIR}/lib
)
set(CLAPACK_LIBS ${CLAPACK_LIBS} ${CLAPACK_F2C_LIBRARY})
find_library(LIBXML2_LIBRARY
NAMES libxml2.a libxml2.so libxml2.dylib libxml2.lib
PATHS ${DEPENDENCY_DIR}/lib
${SBML_DIR}/lib
/usr/lib /usr/local/lib
${CMAKE_SOURCE_DIR}
${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib
)
#
# include_directories(${LIBXML2_INCLUDE})
#
# find_library(BZ2_LIBRARY
# NAMES libbz2.a libbz2.so libbz2.dylib libbz2.lib
# PATHS ${DEPENDENCY_DIR}/lib
# ${SBML_DIR}/lib
# /usr/lib /usr/local/lib
# ${CMAKE_SOURCE_DIR}
# ${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib
# )
#
#
# include_directories(${BZ2_INCLUDE})
#
# if (${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
# find_library(LIBZ_LIBRARY
# NAMES libz.a libz.so libz.dylib
# PATHS ${DEPENDENCY_DIR}/lib
# ${SBML_DIR}/lib
# /usr/lib /usr/local/lib
# ${CMAKE_SOURCE_DIR}
# )
# include_directories(${LIBZ_INCLUDE})
# endif()
#
# find_library(LIBICONV_LIBRARY
# NAMES libiconv.a libiconv.so libiconv.dylib libiconv.lib
# PATHS ${DEPENDENCY_DIR}/lib
# ${SBML_DIR}/lib
# /usr/lib /usr/local/lib
# ${CMAKE_SOURCE_DIR}
# ${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib
# )
#
# include_directories(${LIBICONV_INCLUDE})
#
# find_library(ZDLL_LIBRARY
# NAMES zdll.a zdll.so zdll.dylib zdll.lib
# PATHS ${DEPENDENCY_DIR}/lib
# ${SBML_DIR}/lib
# /usr/lib /usr/local/lib
# ${CMAKE_SOURCE_DIR}
# ${CMAKE_SOURCE_DIR}/dependencies/libsbml-5.15.0-vs2017-release-64/lib
# )
#
# include_directories(${ZDLL_INCLUDE})
####################################################################
#
# Need some variables set up, such as the name for the libSBML
# library and the Path and file separator characters
#
if(UNIX)
set(PATH_SEP "/")
set(FILE_SEP ":")
else()
set(PATH_SEP "\\")
set(FILE_SEP ";")
endif()
####################################################################
#
# Set up remaining variables, add option for universal binaries
#
set(BUILD_DEFINITIONS)
set(USING_INTEL)
if(UNIX)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fPIC")
set(CMAKE_C_FLAGS "${CMAKE_CXX_FLAGS} -fPIC")
if(APPLE)
add_definitions(-DMACOSX -DDARWIN -DLINUX)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DMACOSX")
# On OSX it is common to build universal binaries to support multiple
# processor architectures. The default behavior is not to build
# multiple architectures, as most users might not need that.
option(ENABLE_UNIVERSAL "Create universal binaries on Mac OS X." OFF)
set(CMAKE_OSX_ARCHITECTURES "${CMAKE_OSX_ARCHITECTURES}" CACHE STRING
"A semicolon-separated list of build architectures to be used.")
if(ENABLE_UNIVERSAL)
# if universal binaries are requested and none defined so far
# overwrite them with all three common architectures. If the user
# specified their own list of architectures do not touch!
if(CMAKE_OSX_ARCHITECTURES STREQUAL "")
STRING(REGEX REPLACE "^.*MacOSX([0-9]*\\.[0-9]*)\\.sdk$" "\\1"
OSX_SDK_VERSION "${CMAKE_OSX_SYSROOT}")
if(OSX_SDK_VERSION VERSION_EQUAL "10.7" )
# OSX Lion no longer supports ppc architecture
set(CMAKE_OSX_ARCHITECTURES "i386;x86_64" CACHE STRING
"A semicolon-separated list of build architectures to be used." FORCE)
else()
set(CMAKE_OSX_ARCHITECTURES "i386;ppc;x86_64" CACHE STRING
"A semicolon-separated list of build architectures to be used." FORCE)
endif()
endif()
endif(ENABLE_UNIVERSAL)
else(APPLE)
add_definitions(-DLINUX)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DLINUX")
endif(APPLE)
add_definitions( -DPACKAGE_VERSION=\"${PACKAGE_VERSION}\" -DPACKAGE_NAME=\"${PROJECT_NAME}\")
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DPACKAGE_VERSION=\"${PACKAGE_VERSION}\" -DPACKAGE_NAME=\"${PROJECT_NAME}\"")
else(UNIX)
option(LIBSBML_STATIC_LIB "Check this if linking against static libSBML." ON)
if (WIN32 AND CMAKE_C_COMPILER AND ${CMAKE_C_COMPILER} MATCHES ".*icl.*$")
message(STATUS "Detected Intel Compiler")
set(USING_INTEL TRUE)
endif ()
set(STRUCTURAL_LIBS ${STRUCTURAL_LIBS} )
add_definitions(-DWIN32 -DLIB_EXPORTS -DLIBLAX_EXPORTS)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DWIN32 -DLIB_EXPORTS -DLIBLAX_EXPORTS")
if (LIBSBML_STATIC_LIB)
add_definitions(-DLIBSBML_STATIC -DLIBLAX_STATIC)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DLIBSBML_STATIC -DLIBLAX_STATIC")
else(LIBSBML_STATIC_LIB)
add_definitions(-DLIBLAX_EXPORTS -DLIBSBML_STATIC)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DLIBLAX_EXPORTS -DLIBSBML_STATIC")
endif(LIBSBML_STATIC_LIB)
if(MSVC OR USING_INTEL)
add_definitions(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -D_CRT_SECURE_NO_WARNINGS")
option(WITH_STATIC_RUNTIME "Compile using the static MSVC Runtime" OFF)
if (WITH_STATIC_RUNTIME)
foreach(flag_var
CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE
CMAKE_CXX_FLAGS_MINSIZEREL CMAKE_CXX_FLAGS_RELWITHDEBINFO)
#if(${flag_var} MATCHES "/MD")
# string(REGEX REPLACE "/MD" "/MT" ${flag_var} "${${flag_var}}")
#endif(${flag_var} MATCHES "/MD")
endforeach(flag_var)
add_definitions( -D_MT)
endif(WITH_STATIC_RUNTIME)
file(GLOB WIN32_BINARIES ${CMAKE_SOURCE_DIR}/dependencies/bin/*.dll)
INSTALL(FILES ${WIN32_BINARIES} DESTINATION bin)
elseif(CYGWIN)
add_definitions(-DCYGWIN)
set(BUILD_DEFINITIONS "${BUILD_DEFINITIONS} -DCYGWIN")
elseif(MINGW)
if(WITH_LIBXML)
# this is necessary to build with libxml2 on mingw
add_definitions(-DLIBXML_STATIC)
endif(WITH_LIBXML)
endif(MSVC OR USING_INTEL)
endif(UNIX)
####################################################################
#
# Build the actual libraries
#
add_subdirectory(LibLA)
add_subdirectory(LibStructural)
if(ENABLE_PYTHON_WRAPPER)
add_subdirectory(SWIG)
endif()
file(GLOB HEADER_FILES ${CMAKE_CURRENT_SOURCE_DIR}/include/*.h )
install(FILES ${HEADER_FILES} DESTINATION include)