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Phylo.py core genome output #19

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moorembioinfo opened this issue Jan 17, 2024 · 0 comments

moorembioinfo commented Jan 17, 2024

With phylo.py, the core genome output doesn't match expectations. Assuming I'm correct in thinking that the .matrix is the right output.

With my alignment and a threshold of 0.95, 4,800,000/5,000,000 sites should be retained. Instead, 4,781,411 are output.

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