Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Improve error message of mixed single/paired reads #39

Merged
merged 1 commit into from
Oct 28, 2021

Conversation

sjackman
Copy link
Contributor

@sjackman sjackman commented Oct 28, 2021

Change the error message from
bamtofastq error: Not a valid read pair: false, false
to
bamtofastq error: Unexpected single-end read: X:1:X:1:2:345:6789

Change the error message from
    bamtofastq error: Not a valid read pair: false, false
to
    bamtofastq error: Unexpected single-end read: X:1:X:1:2:345:6789
Copy link
Contributor

@pmarks pmarks left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

noice

Copy link
Contributor

@nlhepler nlhepler left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Sweet

@sjackman sjackman merged commit e63cd13 into master Oct 28, 2021
@sjackman sjackman deleted the sj/mixed-bam-error branch October 28, 2021 19:15
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants