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1. TEanalysis TEanalysis Public

   Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.

   Perl 25 11

2. Parsing-RepeatMasker-Outputs Parsing-RepeatMasker-Outputs Public

   Few scripts facilitating the extraction of info from Repeat Masker .out files

   Perl 78 32

3. Fasta Fasta Public

   Perl scripts dealing with fasta files

   Perl 6 5

4. DelGet DelGet Public

   Get micro and midsize deletions specific to 2+ closely related species after their split

   Perl 2

5. MAF_parsing MAF_parsing Public

   Get micro deletion amounts to place rates on a tree, from a .maf file

   Perl 4 1

6. TEorthology TEorthology Public

   Script to help assessing the evolutionary history of a TE family

   Perl 15 4