Merge pull request #297 from fedorov/add-docker

ENH: add a dockerfile that exposes command line tools

docker/cli/Dockerfile

@@ -0,0 +1,100 @@
+FROM centos:5
+MAINTAINER http://github.com/radiomics
+
+RUN yum update -y && \
+  yum groupinstall -y "Development Tools" && \
+  yum install -y curl \
+   curl-devel \
+   coreutils \
+   gcc \
+   gcc-c++ \
+   gettext \
+   openssl-devel \
+   perl \
+   wget \
+   zlib-devel
+
+WORKDIR /etc/yum.repos.d
+RUN wget http://people.centos.org/tru/devtools-2/devtools-2.repo
+RUN yum install -y devtoolset-2-gcc \
+  devtoolset-2-binutils \
+  devtoolset-2-gcc-gfortran \
+  devtoolset-2-gcc-c++
+ENV CC /opt/rh/devtoolset-2/root/usr/bin/gcc
+ENV CXX /opt/rh/devtoolset-2/root/usr/bin/g++
+ENV FC /opt/rh/devtoolset-2/root/usr/bin/gfortran
+
+# Build and install git from source.
+#WORKDIR /usr/src
+#ENV GIT_VERSION 2.11.0
+#RUN wget https://github.com/git/git/archive/v${GIT_VERSION}.tar.gz -O git-${GIT_VERSION}.tar.gz && \
+#  tar xvzf git-${GIT_VERSION}.tar.gz && \
+#  cd git-${GIT_VERSION} && \
+#  make prefix=/usr all && \
+#  make prefix=/usr install && \
+#  cd .. && rm -rf git-${GIT_VERSION}*
+
+# Build and install git from source.
+WORKDIR /usr/src
+ENV GIT_VERSION 2.5.0
+RUN wget --no-check-certificate https://www.kernel.org/pub/software/scm/git/git-${GIT_VERSION}.tar.gz && \
+  tar xvzf git-${GIT_VERSION}.tar.gz && \
+  cd git-${GIT_VERSION} && \
+  ./configure --prefix=/usr && \
+  make && \
+  make install && \
+  cd .. && rm -rf git-${GIT_VERSION}*
+
+# Build and install CMake from source.
+WORKDIR /usr/src
+RUN git clone git://cmake.org/cmake.git CMake && \
+  cd CMake && \
+  git checkout v3.7.2 && \
+  mkdir /usr/src/CMake-build && \
+  cd /usr/src/CMake-build && \
+  /usr/src/CMake/bootstrap \
+    --parallel=$(grep -c processor /proc/cpuinfo) \
+    --prefix=/usr && \
+  make -j$(grep -c processor /proc/cpuinfo) && \
+  ./bin/cmake \
+    -DCMAKE_BUILD_TYPE:STRING=Release \
+    -DCMAKE_USE_OPENSSL:BOOL=ON . && \
+  make install && \
+  cd .. && rm -rf CMake*
+
+# Build and install Python from source.
+WORKDIR /usr/src
+ENV PYTHON_VERSION 2.7.10
+RUN wget https://www.python.org/ftp/python/${PYTHON_VERSION}/Python-${PYTHON_VERSION}.tgz && \
+  tar xvzf Python-${PYTHON_VERSION}.tgz && \
+  cd Python-${PYTHON_VERSION} && \
+  ./configure && \
+  make -j$(grep -c processor /proc/cpuinfo) && \
+  make install && \
+  cd .. && rm -rf Python-${PYTHON_VERSION}*
+
+# Build and install ninja from source.
+WORKDIR /usr/src
+RUN git clone https://github.com/martine/ninja.git && \
+  cd ninja && \
+  git checkout v1.6.0 && \
+  ./configure.py --bootstrap && \
+  mv ninja /usr/bin/ && \
+  cd .. && rm -rf ninja
+
+# Install pyradiomics
+WORKDIR /usr/src
+RUN git clone https://github.com/radiomics/pyradiomics.git && \
+  cd pyradiomics && \
+  python --version && \
+  wget --no-check-certificate https://bootstrap.pypa.io/get-pip.py && \
+  python get-pip.py && \
+  pip install wheel>=0.29.0 && \
+  pip install setuptools>=28.0.0 && \
+  pip install --trusted-host www.itk.org -f https://itk.org/SimpleITKDoxygen/html/PyDownloadPage.html SimpleITK>=0.9.1 && \
+  python -c "import SimpleITK; print('SimpleITK Version:' + SimpleITK.Version_VersionString())" && \
+  pip install -r requirements.txt && \
+  python setup.py install
+
+WORKDIR /usr/src
+ENTRYPOINT ["pyradiomics"]