Add voxel cli #457
Merged
Add voxel cli #457
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add a new switch in PyRadiomics commandline entrypoint: `--mode`, `-m`, which takes either `segment` (default) or `voxel`. Add a new switch in PyRadiomics commandline entrypoint: `--out-dir`, `-od`, which specifies a directory (created if not exists) where featuremaps (mode `voxel`) or intermediate files (mode `segment`) are stored. If not specified, featuremaps are stored in the current working directory and intermediate files are not stored. Refactor the commandline parsing and running of PyRadiomics. Allow adding diagnositic info to the output when extracting voxel-based features. After extracting features in a case, results are split into featuremaps, which are stored as SimpleITK images and non-features, which are processed as the output of segment-based extraction.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Update command line entry point to allow either segment- or voxel-based extraction.
Update documentation to detail usage of PyRadiomics in voxel-based extraction.