Skip to content

Commit

Permalink
Prepare for binder (#1935)
Browse files Browse the repository at this point in the history
  • Loading branch information
dweindl authored Jan 16, 2023
1 parent ee2b6a3 commit 0d371d8
Show file tree
Hide file tree
Showing 5 changed files with 23 additions and 0 deletions.
5 changes: 5 additions & 0 deletions .binder/README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
# .binder/

Configuration files for [binder](https://mybinder.org/) / repo2docker.

Doc: https://mybinder.readthedocs.io/en/latest/using/config_files.html
5 changes: 5 additions & 0 deletions .binder/apt.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
clang
libatlas-base-dev
libboost-serialization-dev
libhdf5-serial-dev
swig
6 changes: 6 additions & 0 deletions .binder/postBuild
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
#!/bin/bash
set -eou pipefail

pip install -e python/sdist[petab,pysb]

scripts/buildBNGL.sh
1 change: 1 addition & 0 deletions .binder/runtime.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
python-3.10
6 changes: 6 additions & 0 deletions .binder/start
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
#!/bin/bash
set -eou pipefail

export BNGPATH="$(pwd)/ThirdParty/BioNetGen-2.7.0"

exec "$@"

0 comments on commit 0d371d8

Please sign in to comment.