Decouple JAX & C++ code generation

[FFroehlich]

Seperates code generation for JAX & C++. Enables alteration of generated symbolics for JAX.

[codecov]

Codecov Report

Attention: Patch coverage is 98.38710% with 2 lines in your changes missing coverage. Please review.

Project coverage is 77.89%. Comparing base (bd3bd91) to head (45c67b2).
Report is 1 commits behind head on develop.

Files with missing lines	Patch %	Lines
python/sdist/amici/jax/ode_export.py	98.00%	1 Missing ⚠️
python/sdist/amici/pysb_import.py	90.90%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #2615      +/-   ##
===========================================
+ Coverage    77.80%   77.89%   +0.08%     
===========================================
  Files          329      330       +1     
  Lines        21737    21833      +96     
  Branches      1477     1477              
===========================================
+ Hits         16912    17006      +94     
- Misses        4814     4816       +2     
  Partials        11       11              

Flag	Coverage Δ
cpp	74.14% <78.22%> (-0.01%)	⬇️
cpp_python	33.65% <28.22%> (-0.51%)	⬇️
petab	36.46% <50.00%> (-0.54%)	⬇️
python	72.48% <78.22%> (-0.01%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
python/sdist/amici/__init__.py	94.11% <ø> (ø)
python/sdist/amici/de_export.py	97.03% <100.00%> (+0.41%)	⬆️
python/sdist/amici/jax/jaxcodeprinter.py	85.00% <ø> (ø)
python/sdist/amici/petab/import_helpers.py	85.93% <ø> (ø)
python/sdist/amici/petab/petab_import.py	66.66% <ø> (ø)
python/sdist/amici/petab/pysb_import.py	51.85% <ø> (ø)
python/sdist/amici/petab/sbml_import.py	73.33% <100.00%> (+19.04%)	⬆️
python/sdist/amici/sbml_import.py	79.67% <100.00%> (+0.10%)	⬆️
python/sdist/amici/jax/ode_export.py	98.00% <98.00%> (ø)
python/sdist/amici/pysb_import.py	94.15% <90.90%> (-0.15%)	⬇️

[dweindl]

Looks good to me.-

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud