Switch to giatools support package

BMCV · Apr 23, 2024 · 0493064 · 0493064
1 parent 25c7b18
commit 0493064
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Showing 3 changed files with 3 additions and 33 deletions.
diff --git a/tools/2d_auto_threshold/auto_threshold.py b/tools/2d_auto_threshold/auto_threshold.py
@@ -7,10 +7,9 @@
 
 import argparse
 
-import giatools
+import giatools.io
 import numpy as np
 import skimage.filters
-import skimage.io
 import skimage.util
 import tifffile
 
@@ -30,7 +29,7 @@
 
 
 def do_thresholding(in_fn, out_fn, th_method, block_size, offset, threshold, invert_output=False):
-    img = giatools.imread(in_fn)
+    img = giatools.io.imread(in_fn)
     img = np.squeeze(img)
     assert img.ndim == 2
 

diff --git a/tools/2d_auto_threshold/auto_threshold.xml b/tools/2d_auto_threshold/auto_threshold.xml
@@ -22,6 +22,7 @@
     <requirements> 
         <requirement type="package" version="@TOOL_VERSION@">scikit-image</requirement>
         <requirement type="package" version="2020.10.1">tifffile</requirement>
+        <requirement type="package" version="0.1">giatools</requirement>
     </requirements>
     <command detect_errors="aggressive">
     <![CDATA[

diff --git a/tools/2d_auto_threshold/giatools.py b/tools/2d_auto_threshold/giatools.py