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v1.3.0
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@ch4rr0 ch4rr0 released this 23 Jul 03:39
· 24 commits to master since this release
v1.3.0
1cc0a45
  • Fixed an issue causing bowtie to report incorrect results when using a Bowtie 2 index.
  • New, more efficient implementation of --reorder for keeping SAM output lines in same order as input reads
  • Added -x parameter for specifying index. bowtie still supports specifying an index via positional parameter, but this behavior will be deprecated.
  • Migrated python scripts to python3.
  • Fully removed colorspace functionality.
  • Added support for compiling on ARM architectures.
  • Fixed an issue preventing bowtie from outputting newlines in --max and --un output files.
  • Fixed an issue causing alignment results to vary based on read names.
  • Fixed an issue preventing --no-unal from suppressing unmapped reads.
  • Removed dependence on some third-party libraries, simplifying the code and improving portability.
  • Fix an issue preventing bowtie from running with many threads on big-endian machines.
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