Total Width, Total Height and Total Depth features

[anilbey]

Greetings, among some other features, the HIPPOCAMPUS portal requires these 3 features for each neurite to be provided for a given morphology ticket url.

• Total Width
• Total Height
• Total Depth

As suggested on the ticket ticket url, these features can be computed by subtracting the max point on the bounding box from the min point for each axes.

Instead of implementing these features in a 3rd party script/package I think including them directly in NeuroM is more meaningful. What do you think?

[eleftherioszisis]

It makes sense to me to have these features in NeuroM. I introduced them at the Morphology level.

[anilbey]

Thanks @eleftherioszisis I am testing the PR now.

[anilbey]

I can't get the value for the neurite. For morphology it works fine but Armando also wants to see these values for neurites.

nm.get("total_length", morph_factsheet_builder.morphology) # works
nm.get("total_length", morph_factsheet_builder.morphology, neurite_type=neurite_types[0]) # works

nm.get("total_height", morph_factsheet_builder.morphology) # works
nm.get("total_height", morph_factsheet_builder.morphology, neurite_type=neurite_types[0]) # fails

[eleftherioszisis]

Indeed. Right now it's only on the Morphology level as I described.

What would be the expected value of the:

nm.get("total_height", morph_factsheet_builder.morphology, neurite_type=neurite_types[0])

Would it be a single total_height value of all the neurites in the morphology with that specific type?

[anilbey]

Would it be a single total_height value of all the neurites in the morphology with that specific type?

Yes exactly.