CovidHub-baseline #4
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: "CovidHub-baseline" | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "30 20 * * 3" | |
| jobs: | |
| generate-baseline-forecasts: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("readr", "dplyr", "tidyr", "purrr", "checkmate", "cli", "lubridate", "remotes", "genlasso")) | |
| remotes::install_github("cmu-delphi/epiprocess") | |
| remotes::install_github("cmu-delphi/epipredict") | |
| shell: Rscript {0} | |
| - name: generate baseline | |
| run: | | |
| Rscript src/code/get_baseline.r | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| message: "Add baseline forecasts" | |
| default_author: github_actions | |
| push: true | |
| new_branch: auto-baseline | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| commit-message: "Add baseline forecasts" | |
| title: "Add baseline forecasts" | |
| body: "This PR adds baseline forecasts to the repo." | |
| branch: "auto-baseline" | |
| base: "main" | |
| labels: "automerge" |