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Version 0.0.6 release #170

Merged
merged 28 commits into from
Jan 17, 2022
Merged

Version 0.0.6 release #170

merged 28 commits into from
Jan 17, 2022

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sfarrens
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Summary

  • Included PySAP-ETomo plug-in for Electron Tomography
  • Updated environment.yml to included PySAP-ETomo dependencies
  • Added optional installation of Sparse2D and PySAP plug-ins
  • Updated readme.rst with new installation options
  • Added -std=c++14 flag for Sparse2D build

ModOpt and Plug-In Versions

  • ModOpt v1.6.0
  • PySAP-Astro v0.0.1
  • PySAP-ETomo v0.0.1
  • PySAP-MRI v0.4.0

PRs Included

sfarrens and others added 27 commits April 14, 2021 16:40
* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples
* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile
* set plug-in and modopt versions for next release

* updated pysap-mri version
Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>
* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env
* updated nosetests to provide XML outputs

* added Docker badge
* Final clean up (#154)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* Continuous Deployment (#155)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* Fix modopt version in conda env (#156)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

* Update environment.yml

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* add sdt flag for c++14

Co-authored-by: Samuel Farrens <[email protected]>
Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>
@sfarrens sfarrens self-assigned this Jan 17, 2022
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@philouc philouc left a comment

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Great job @sfarrens

@philouc philouc merged commit 2268299 into master Jan 17, 2022
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4 participants