Skip to content

Commit

Permalink
add: release notes for Ordino release v10.1 (#147)
Browse files Browse the repository at this point in the history
Co-authored-by: oltionchampari <[email protected]>
Closes Caleydo/tdp_bi_bioinfodb#1407
  • Loading branch information
thinkh authored Nov 22, 2022
1 parent 9323cbb commit a2175c5
Show file tree
Hide file tree
Showing 5 changed files with 52 additions and 18 deletions.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
45 changes: 45 additions & 0 deletions src/pages/NewsPage.tsx
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,52 @@ import v910_auto_complete from '../assets/pages/news/v910_auto_complete.png';
import v910_usability_improvements from '../assets/pages/news/v910_usability_improvements.png';
import v920_drug_scientific_name from '../assets/pages/news/v920_drug_scientific_name.png';

import v1010_depletion_screen_scores from '../assets/pages/news/v1010_depletion_screen_scores.png';
import v1010_ranking_selection from '../assets/pages/news/v1010_ranking_selection.png';

const sections = [
{
id: 'v10-1',
name: 'Version 10.1 (2022-11-23)',
markup: () => (
<>
<p className="lead text-muted">
This update contains various <b>usability improvements</b> and several <b>bug fixes</b>. The most important changes are:
</p>

<h5 className="mt-4">Additional depletion screen scores</h5>
<p>
The depletion screen scores for <i>Avana Chronos (DepMap.org)</i> and <i>Sanger E-score (Fiona M. Behan et al., Nature 2019)</i> are now available for
cell lines. The scores can be added using the <i>Add Column</i> dialog and then selecting the respective data type in the dialog.
</p>
<img className=" img-fluid border border-gray-300" src={v1010_depletion_screen_scores} alt="Additional depletion screen scores for cell lines." />

<h5 className="mt-4">Minimum value of scores set to zero</h5>
<p>
Previously, the minimum was automatically derived from the loaded score data. With this Ordino version, the minimum value for the following scores has
been set to zero:
</p>
<ul>
<li>Normalized Gene Expression (TPM Values)</li>
<li>Raw Counts</li>
<li>Relative Copy Number</li>
<li>Total Absolute Copy Number</li>
<li>Zygosity</li>
</ul>

<h5 className="mt-4">Ranking usability improvements</h5>
<p>
The ranking highlights selected rows with a background color for better distinction. An orange indicator next to the scrollbar shows the position of
selected rows in the ranking and facilitates scrolling to these rows.
</p>
<img
className=" img-fluid border border-gray-300"
src={v1010_ranking_selection}
alt="Highlight selected rows and indicate the position next to the scrollbar."
/>
</>
),
},
{
id: 'v9-2',
name: 'Version 9.2 (2022-04-28)',
Expand Down
2 changes: 1 addition & 1 deletion src/pages/components/OrdinoContactForm.tsx
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ export function OrdinoContactForm() {
<div className="card-body">
<p className="card-text">
{'Do you have questions or found a bug, do not hesitate to contact us using the contact form below. You can also contact us by writing an email to '}
<a className="card-link" href="mailto:[email protected]." data-testid="ordino-email">
<a className="card-link" href="mailto:[email protected]" data-testid="ordino-email">
[email protected]
</a>
. We are glad to help you.
Expand Down
23 changes: 6 additions & 17 deletions src/pages/components/OrdinoTeaserCards.tsx
Original file line number Diff line number Diff line change
Expand Up @@ -11,25 +11,14 @@ export function OrdinoTeaserCards() {
</h4>
<div className="card shadow-sm h-100">
<div className="card-body">
<p className="card-text">With Ordino v9.0 we have launched a whole new homepage, start menu, and various usability improvements.</p>
<p className="card-text">
The new homepage welcomes new and recurring users and provides an overview of the Ordino{' '}
<Link to="/features" data-testid="features-link">
features
</Link>
,{' '}
<Link to="/datasets" data-testid="datasets-link">
loaded datasets
</Link>
, and{' '}
<Link to="/publications" data-testid="publications-link">
publications
</Link>
.
</p>
<p className="card-text">
In addition to the new homepage we designed an entirely new Ordino start menu which provides quick access to datasets, sessions and tours.
Ordino v10.1 contains various <b>usability improvements</b> and several <b>bug fixes</b>. The most important changes are:
</p>
<ul>
<li>Additional depletion screen scores</li>
<li>Minimum value of scores set to zero</li>
<li>Ranking usability improvements</li>
</ul>
</div>
<div className="card-footer">
<Link to="/news" className="btn btn-light" data-testid="release-notes-link">
Expand Down

0 comments on commit a2175c5

Please sign in to comment.