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Resolve merge conflict in workflows file for FCOO
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,122 @@ | ||
| name: io_gnu | ||
| on: [push, pull_request, workflow_dispatch] | ||
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| # Cancel in-progress workflows when pushing to a branch | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
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| env: | ||
| cache_key: gnu11-1 | ||
| CC: gcc-10 | ||
| FC: gfortran-10 | ||
| CXX: g++-10 | ||
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| # Split into a steup step, and a WW3 build step which | ||
| # builds multiple switches in a matrix. The setup is run once and | ||
| # the environment is cached so each build of WW3 can share the dependencies. | ||
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| jobs: | ||
| setup: | ||
| runs-on: ubuntu-latest | ||
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| steps: | ||
| - name: checkout-ww3 | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| path: ww3 | ||
| # Cache spack, OASIS, and compiler | ||
| # No way to flush Action cache, so key may have # appended | ||
| - name: cache-env | ||
| id: cache-env | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: | | ||
| spack | ||
| ~/.spack | ||
| work_oasis3-mct | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }} | ||
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| # Build WW3 spack environment | ||
| - name: install-dependencies-with-spack | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| run: | | ||
| # Install NetCDF, ESMF, g2, etc using Spack | ||
| sudo apt install cmake | ||
| git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git | ||
| source spack/share/spack/setup-env.sh | ||
| spack env create ww3-gnu ww3/model/ci/spack_gnu.yaml | ||
| spack env activate ww3-gnu | ||
| spack compiler find | ||
| spack external find cmake | ||
| spack add [email protected] | ||
| spack concretize | ||
| spack install --dirty -v | ||
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| - name: build-oasis | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| run: | | ||
| source spack/share/spack/setup-env.sh | ||
| spack env activate ww3-gnu | ||
| export WWATCH3_DIR=${GITHUB_WORKSPACE}/ww3/model | ||
| export OASIS_INPUT_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/oasis3-mct | ||
| export OASIS_WORK_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct | ||
| cd ww3/regtests/ww3_tp2.14/input/oasis3-mct/util/make_dir | ||
| cmake . | ||
| make VERBOSE=1 | ||
| cp -r ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct ${GITHUB_WORKSPACE} | ||
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| io_gnu: | ||
| needs: setup | ||
| runs-on: ubuntu-latest | ||
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| steps: | ||
| - name: install-dependencies | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install doxygen gcovr valgrind | ||
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| - name: checkout-ww3 | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| path: ww3 | ||
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| - name: cache-env | ||
| id: cache-env | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: | | ||
| spack | ||
| ~/.spack | ||
| work_oasis3-mct | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }} | ||
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| - name: build-ww3 | ||
| run: | | ||
| source spack/share/spack/setup-env.sh | ||
| spack env activate ww3-gnu | ||
| set -x | ||
| cd ww3 | ||
| export CC=mpicc | ||
| export FC=mpif90 | ||
| export OASISDIR=${GITHUB_WORKSPACE}/work_oasis3-mct | ||
| mkdir build && cd build | ||
| export LD_LIBRARY_PATH="/home/runner/work/WW3/WW3/spack/var/spack/environments/ww3-gnu/.spack-env/view/:$LD_LIBRARY_PATH" | ||
| cmake -DSWITCH=${GITHUB_WORKSPACE}/ww3/regtests/unittests/data/switch.io -DCMAKE_BUILD_TYPE=Debug -DCMAKE_Fortran_FLAGS="-g -fprofile-abs-path -fprofile-arcs -ftest-coverage -O0 -Wall -fno-omit-frame-pointer -fsanitize=address" -DCMAKE_C_FLAGS="-g -fprofile-abs-path -fprofile-arcs -ftest-coverage -O0 -Wall -fno-omit-frame-pointer -fsanitize=address" .. | ||
| make -j2 VERBOSE=1 | ||
| ./bin/ww3_grid | ||
| mv mod_def.ww3 regtests/unittests | ||
| ctest --verbose --output-on-failure --rerun-failed | ||
| gcovr --root .. -v --html-details --exclude ../regtests/unittests --exclude CMakeFiles --print-summary -o test-coverage.html &> /dev/null | ||
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| - name: upload-test-coverage | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: ww3-test-coverage | ||
| path: | | ||
| ww3/build/*.html | ||
| ww3/build/*.css | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,39 @@ | ||
| # This is the CMake file for the model/tests directory in the WW3 | ||
| # project. | ||
| # | ||
| # Ed Hartnett, 10/14/23 | ||
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| # Some very small test files may be committed to the repo. This | ||
| # function copies such a data file to the build directory. | ||
| function(copy_test_data name) | ||
| message(STATUS "Copying ${name} to ${CMAKE_CURRENT_BINARY_DIR}") | ||
| file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/data/${name}" | ||
| DESTINATION ${CMAKE_CURRENT_BINARY_DIR} | ||
| FILE_PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ) | ||
| endfunction() | ||
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| # Some very small test files may be committed to the repo. This | ||
| # function copies such a data file to the build directory. | ||
| function(copy_test_data_2 srcname destname) | ||
| message(STATUS "Copying ${srcname} to ${CMAKE_CURRENT_BINARY_DIR}/${destname}") | ||
| file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/data/${srcname}" | ||
| DESTINATION "${CMAKE_BINARY_DIR}" | ||
| FILE_PERMISSIONS OWNER_READ OWNER_WRITE GROUP_READ WORLD_READ) | ||
| file(RENAME "${CMAKE_BINARY_DIR}/${srcname}" "${CMAKE_BINARY_DIR}/${destname}") | ||
| endfunction() | ||
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| # Function to build and run a test. | ||
| function(unit_test name) | ||
| add_executable(${name} ${name}.F90) | ||
| target_link_libraries(${name} PRIVATE ww3_lib) | ||
| add_test(NAME ${name} COMMAND ${name}) | ||
| endfunction() | ||
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| # Copy test data files that are in the repo to the build directory. | ||
| copy_test_data(switch.io) | ||
| copy_test_data_2(ww3_grid.inp ww3_grid.inp) | ||
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| # Build and run the tests. | ||
| unit_test(test_io_points_bin) | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| NOGRB SHRD PR1 FLX2 LN0 ST0 NL0 BT0 DB0 TR0 BS0 IC0 IS0 REF0 WNT1 WNX1 CRT1 CRX1 O0 O1 O2 O3 O4 O5 O6 O7 O10 O11 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,48 @@ | ||
| $ WAVEWATCH III Grid preprocessor input file | ||
| $ ------------------------------------------ | ||
| '1-D REFRACTION X ' | ||
| $ | ||
| 1.25 0.08 3 24 0. | ||
| $ | ||
| F T F T F F | ||
| 300. 300. 150. 300. | ||
| $ | ||
| &PRO1 CFLTM = 0.75 / | ||
| &PRO2 CFLTM = 0.75 / | ||
| &PRO3 CFLTM = 0.75, WDTHCG = 0., WDTHTH = 0. / | ||
| &PRO4 CFLTM = 0.75, RNFAC = 0., RSFAC = 0. / | ||
| END OF NAMELISTS | ||
| $ | ||
| 'RECT' F 'NONE' | ||
| 13 3 | ||
| 5.E3 5.E3 1. | ||
| -5.E3 -5.E3 1. | ||
| $ | ||
| -1. 1. 10 -1. 2 1 '(....)' 'UNIT' 'input' | ||
| $ | ||
| $ First grid | ||
| $ | ||
| 50 50 50 45 40 35 30 25 20 15 10 5 0 | ||
| 50 50 50 45 40 35 30 25 20 15 10 5 0 | ||
| 50 50 50 45 40 35 30 25 20 15 10 5 0 | ||
| $ | ||
| $ Second grid | ||
| $ | ||
| $ 0 5 10 15 20 25 30 35 40 45 50 50 50 | ||
| $ 0 5 10 15 20 25 30 35 40 45 50 50 50 | ||
| $ 0 5 10 15 20 25 30 35 40 45 50 50 50 | ||
| $ | ||
| 10 1 1 '(....)' 'PART' 'input' | ||
| $ | ||
| $ First grid | ||
| $ | ||
| 2 2 F | ||
| $ | ||
| $ Second grid | ||
| $ | ||
| $ 12 2 F | ||
| 0 0 F | ||
| 0 0 F | ||
| 0 0 | ||
| $ | ||
| 0. 0. 0. 0. 0 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| $ | ||
| 20100101 000000 3600 1 | ||
| $ | ||
| 1 | ||
| -1 | ||
| $ | ||
| 4 | ||
| 2 30 20100101 000000 'UTC' |
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