MAINT: update lock files

.github/workflows/ci.yml

@@ -36,7 +36,7 @@ jobs:
     uses: ComPWA/actions/.github/workflows/[email protected]
     with:
       coverage-target: tensorwaves
-      macos-python-version: "3.9"
+      macos-python-version: "3.10"
       specific-pip-packages: ${{ inputs.specific-pip-packages }}
       test-output-path: tests/output/
     secrets:

.pre-commit-config.yaml

@@ -14,11 +14,12 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/ComPWA/policy
-    rev: 0.5.15
+    rev: 0.6.1
     hooks:
       - id: check-dev-files
         args:
           - --doc-apt-packages=graphviz
+          - --excluded-python-versions=3.13
           - --repo-name=tensorwaves
           - --repo-title=TensorWaves
           - --update-lock-files=outsource
@@ -30,6 +31,7 @@ repos:
           - --add-install-cell
           - --additional-packages=IPython
           - --extras-require=doc,jax,pwa,viz
+      - id: set-nb-display-name
 
   - repo: https://github.com/kynan/nbstripout
     rev: 0.8.1
@@ -60,7 +62,7 @@ repos:
             metadata.vscode
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.1
+    rev: v0.9.3
     hooks:
       - id: ruff
         args: [--fix]
@@ -126,12 +128,12 @@ repos:
         pass_filenames: false
 
   - repo: https://github.com/streetsidesoftware/cspell-cli
-    rev: v8.17.0
+    rev: v8.17.1
     hooks:
       - id: cspell
 
   - repo: https://github.com/editorconfig-checker/editorconfig-checker.python
-    rev: 3.0.3
+    rev: 3.2.0
     hooks:
       - id: editorconfig-checker
         name: editorconfig
@@ -152,11 +154,11 @@ repos:
           - python
 
   - repo: https://github.com/ComPWA/pyright-pre-commit
-    rev: v1.1.391
+    rev: v1.1.392
     hooks:
       - id: pyright
 
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.5.18
+    rev: 0.5.25
     hooks:
       - id: uv-lock

.readthedocs.yml

@@ -14,7 +14,7 @@ build:
       uv run \
         --group doc \
         --no-dev \
-        --with tox \
+        --with tox-uv \
         tox -e doc
       mkdir -p $READTHEDOCS_OUTPUT
       mv docs/_build/html $READTHEDOCS_OUTPUT

.vscode/settings.json

@@ -58,6 +58,7 @@
   "notebook.gotoSymbols.showAllSymbols": true,
   "python.analysis.autoImportCompletions": false,
   "python.analysis.inlayHints.pytestParameters": true,
+  "python.defaultInterpreterPath": ".venv/bin/python",
   "python.terminal.activateEnvironment": false,
   "python.testing.pytestArgs": ["--color=no", "--no-cov"],
   "python.testing.pytestEnabled": true,

docs/install.md

@@ -101,13 +101,13 @@ run into trouble.
    ```
 
 4. Download and install cuDNN following
-   [these instructions](https://docs.nvidia.com/deeplearning/cudnn/installation/overview.html).
+   [these instructions](https://docs.nvidia.com/deeplearning/cudnn/installation/latest/index.html).
    Make sure that you download cuDNN **for CUDA 11.x**!
 
    In Ubuntu (Debian), there are two convenient options: (1)
-   [installing through `apt`](https://docs.nvidia.com/deeplearning/cudnn/installation/linux.html#package-manager-installation)
+   [installing through `apt`](https://docs.nvidia.com/deeplearning/cudnn/installation/latest/linux.html#package-manager-local-installation)
    or (2)
-   [using a local installer](https://docs.nvidia.com/deeplearning/cudnn/installation/linux.html#package-manager-local-installation).
+   [using a local installer](https://docs.nvidia.com/deeplearning/cudnn/installation/latest/linux.html#package-manager-local-installation).
 
 5. **[Recommended]** Install JAX with GPU binaries in your
    {ref}`virtual environment <compwa:develop:Virtual environment>` following

pyproject.toml

@@ -159,10 +159,13 @@ namespaces = false
 where = ["src"]
 
 [tool.setuptools_scm]
-local_scheme = "no-local-version"
-version_scheme = "only-version"
 write_to = "src/tensorwaves/version.py"
 
+[tool.coverage.report]
+exclude_also = [
+    "if TYPE_CHECKING:",
+]
+
 [tool.coverage.run]
 branch = true
 source = ["src"]
@@ -209,16 +212,6 @@ ignore_missing_imports = true
 module = ["tensorflow.python.ops.numpy_ops"]
 
 [tool.pyright]
-exclude = [
-    "**/.git",
-    "**/.ipynb_checkpoints",
-    "**/.mypy_cache",
-    "**/.pytest_cache",
-    "**/.tox",
-    "**/.venv/",
-    "**/__pycache__",
-    "**/_build",
-]
 reportArgumentType = false
 reportAttributeAccessIssue = false
 reportGeneralTypeIssues = false
@@ -445,6 +438,10 @@ trailing_comma_inline_array = true
 
 [tool.tox]
 env_list = [
+    "3.9",
+    "3.10",
+    "3.11",
+    "3.12",
     "cov",
     "docnb-force",
     "linkcheck",
@@ -456,13 +453,16 @@ skip_install = true
 skip_missing_interpreters = true
 
 [tool.tox.env_run_base]
-allowlist_externals = ["pytest"]
 commands = [["pytest", {replace = "posargs", extend = true}]]
-description = "Run all unit tests"
+dependency_groups = ["test"]
+description = "Run test suite on Python {env_name}"
+no_package = false
 pass_env = ["*"]
+runner = "uv-venv-lock-runner"
+skip_install = false
+skip_missing_interpreters = false
 
 [tool.tox.env.bench]
-allowlist_externals = ["pytest"]
 commands = [
     [
         "pytest",
@@ -475,7 +475,6 @@ commands = [
 description = "Run benchmark tests and visualize in histogram"
 
 [tool.tox.env.cov]
-allowlist_externals = ["pytest"]
 commands = [
     [
         "pytest",
@@ -490,6 +489,7 @@ description = "Compute test coverage"
 
 [tool.tox.env.doc]
 allowlist_externals = ["sphinx-build"]
+base = []
 commands = [
     [
         "sphinx-build",
@@ -498,71 +498,78 @@ commands = [
         "--keep-going",
         "--show-traceback",
         "docs/",
-        "docs/_build/html",
+        "docs/_build/html/",
     ],
 ]
 description = "Build documentation and API through Sphinx"
 set_env.PYTHONWARNINGS = ""
 
 [tool.tox.env.doclive]
 allowlist_externals = ["sphinx-autobuild"]
-base = ["tool.tox.env.doc", "tool.tox.env_run_base"]
+base = []
 commands = [
     [
         "sphinx-autobuild",
-        "--builder=dirhtml",
-        "--ignore=docs/_build/",
-        "--ignore=docs/api/",
-        "--ignore=docs/usage/logs/",
-        "--open-browser",
         "--port=0",
-        "--re-ignore='.*/__pycache__/.*'",
-        "--re-ignore='.*/.ipynb_checkpoints/.*'",
-        "--re-ignore='.*/.virtual_documents/.*'",
-        "--re-ignore='.*\\.csv'",
-        "--re-ignore='.*\\.gif'",
-        "--re-ignore='.*\\.gv'",
-        "--re-ignore='.*\\.inv'",
-        "--re-ignore='.*\\.json'",
-        "--re-ignore='.*\\.pickle'",
-        "--re-ignore='.*\\.png'",
-        "--re-ignore='.*\\.svg'",
-        "--re-ignore='.*\\.ya?ml'",
-        "--re-ignore='docs/usage/sub_expr_f?'",
-        "--watch=docs",
+        "--re-ignore=/__pycache__(/.*)?$",
+        "--re-ignore=/_build(/.*)?$",
+        "--re-ignore=/_images(/.*)?$",
+        "--re-ignore=/\\.cache(/.*)?$",
+        "--re-ignore=/\\.egg-info(/.*)?$",
+        "--re-ignore=/\\.ipynb_checkpoints(/.*)?$",
+        "--re-ignore=/\\.venv(/.*)?$",
+        "--re-ignore=/\\.virtual_documents(/.*)?$",
+        "--re-ignore=/api(/.*)?$",
+        "--re-ignore=/docs$",
+        "--re-ignore=/sub_expr_f?",
+        "--re-ignore=/version\\.py$",
+        "--re-ignore=\\.csv$",
+        "--re-ignore=\\.csv$",
+        "--re-ignore=\\.egg-info(/.*)?$",
+        "--re-ignore=\\.gif$",
+        "--re-ignore=\\.gitignore$",
+        "--re-ignore=\\.gv$",
+        "--re-ignore=\\.inv$",
+        "--re-ignore=\\.json$",
+        "--re-ignore=\\.pickle$",
+        "--re-ignore=\\.pkl$",
+        "--re-ignore=\\.png$",
+        "--re-ignore=\\.root$",
+        "--re-ignore=\\.svg$",
+        "--re-ignore=\\.tmp$",
+        "--re-ignore=\\.ya?ml$",
         "--watch=src",
         "docs/",
-        "docs/_build/html",
+        "docs/_build/html/",
     ],
 ]
 description = "Set up a server to directly preview changes to the HTML pages"
 
 [tool.tox.env.docnb]
-base = ["tool.tox.env.doc", "tool.tox.env_run_base"]
+base = ["tool.tox.env.doc"]
 description = "{[tool.tox.env.doc]description} with cached notebook execution"
 set_env = [
     {replace = "ref", of = ["tool.tox.env.doc.set_env"]},
     {EXECUTE_NB = "yes"},
 ]
 
 [tool.tox.env.docnb-force]
-base = ["tool.tox.env.doc", "tool.tox.env_run_base"]
+base = ["tool.tox.env.doc"]
 description = "{[tool.tox.env.doc]description} with notebook execution (no cache)"
 set_env = [
     {replace = "ref", of = ["tool.tox.env.doc.set_env"]},
     {FORCE_EXECUTE_NB = "yes"},
 ]
 
 [tool.tox.env.docnblive]
-base = ["tool.tox.env.doclive", "tool.tox.env_run_base"]
+base = ["tool.tox.env.doclive"]
 description = "{[tool.tox.env.doclive]description} with notebook execution (no cache)"
 set_env = [
     {replace = "ref", of = ["tool.tox.env.doclive.set_env"]},
     {EXECUTE_NB = "yes"},
 ]
 
 [tool.tox.env.jax]
-allowlist_externals = ["pytest"]
 commands = [
     [
         "pytest",
@@ -575,27 +582,40 @@ commands = [
     ],
 ]
 description = "Run tests with JAX only"
+extras = ["jax"]
 
 [tool.tox.env.linkcheck]
-allowlist_externals = ["sphinx-build"]
-base = ["tool.tox.env.doc", "tool.tox.env_run_base"]
+base = ["tool.tox.env.doc"]
 commands = [
     [
         "sphinx-build",
         "--builder=linkcheck",
         "--show-traceback",
         "docs/",
-        "docs/_build/linkcheck",
+        "docs/_build/linkcheck/",
     ],
 ]
 description = "Check external links in the documentation (requires internet connection)"
 
 [tool.tox.env.nb]
-allowlist_externals = ["pytest"]
 commands = [["pytest", "--nbmake", "{posargs:docs}"]]
 description = "Run all notebooks with pytest"
+with_dev = true
 
 [tool.tox.env.sty]
 allowlist_externals = ["pre-commit"]
+base = []
 commands = [["pre-commit", "run", "--all-files", {replace = "posargs", extend = true}]]
 description = "Perform all linting, formatting, and spelling checks"
+
+[tool.tox.labels]
+doc = [
+    "docnb-force",
+    "linkcheck",
+]
+test = [
+    "3.9",
+    "3.10",
+    "3.11",
+    "3.12",
+]