Skip to content

Commit

Permalink
Update USAGE.md
Browse files Browse the repository at this point in the history
  • Loading branch information
mbnmbn00 authored Apr 14, 2017
1 parent 3d96d12 commit 87efb50
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions USAGE.md
Original file line number Diff line number Diff line change
Expand Up @@ -124,13 +124,14 @@ This is very beta version of the software, so please don't hesitate reporting an

<a name="testdata"></a>
## Test dataset
You can download yeast genome and RNA-seq data for testing FunGAP from NCBI.
You can download yeast genome assembly (FASTA) and RNA-seq reads (two FASTQs) from NCBI for testing FunGAP.

```
# Download RNA-seq reads using [SRA toolkit](https://www.ncbi.nlm.nih.gov/sra/docs/toolkitsoft/)
# Download RNA-seq reads using SRA toolkit (https://www.ncbi.nlm.nih.gov/sra/docs/toolkitsoft/)
fastq-dump -I --split-files SRR1198667
# Download assembly
wget ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000146045.2_R64/GCF_000146045.2_R64_genomic.fna.gz
```

It took about 9 hours by dual Intel(R) Xeon(R) CPU E5-2670 v3 with 40 CPU cores.

0 comments on commit 87efb50

Please sign in to comment.