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@michael-conway michael-conway released this 09 Feb 13:24
· 661 commits to master since this release
4.1.10.0-RELEASE
f180e4d

This is a maintenance release of Jargon corresponding to iRODS 4.1.10 and backwards compatible to iRODS 3.3.1. Per the 4.1.10.0 Milestone

This is available on Maven

<repository>
            <id>dice.repository</id>
            <name>dice.repository</name>
            <url>https://raw.github.com/DICE-UNC/DICE-Maven/master/releases</url>
            <releases>
                <enabled>true</enabled>
            </releases>
            <snapshots>
                <enabled>false</enabled>
                <updatePolicy>always</updatePolicy>
                <checksumPolicy>warn</checksumPolicy>
            </snapshots>
        </repository>

....

<dependency>
            <groupId>org.irods.jargon</groupId>
            <artifactId>jargon-core</artifactId>
            <version>4.1.10.0-RELEASE</version>
        </dependency>

Project: Jargon-core API

Date: 2/9/2017

Release Version: 4.1.10.0-RELEASE

git tag: 4.1.10.0-RELEASE

Developer: Mike Conway - DICE

News

4.1.10 Release compatability release
for milestone: https://github.com/DICE-UNC/jargon/milestone/11

This includes support for client-server negotiation and SSL encryption of transport

Please go to [[https://github.com/DICE-UNC/jargon]] for the latest news and info.

Jargon-core consists of the following libraries

  • jargon-core - base libraries, implementation of the iRODS protocol
  • jargon-data-utils - additional functionality for dealing with iRODS data, such as building trees, storing information in iRODS on behalf of applications, and doing diffs between local and iRODS
  • jargon-user-tagging - code for using free tagging and other metadata metaphors on top of iRODS
  • jargon-user-profile - allows management of user profile and related configuration data in a user home directory
  • jargon-ticket - support for ticket processing
  • jargon-httpstream - stream http content into iRODS via Jargon
  • jargon-ruleservice - support for running and managing rules from interfaces

Requirements

  • Jargon depends on Java 1.8+
  • Jargon is built using Apache Maven2, see POM for dependencies
  • Jargon supports iRODS 3.0 through 4.1.10, with preliminary testing complete for iRODS 4.2

Libraries

Jargon-core uses Maven for dependency management. See the pom.xml file for references to various dependencies.

Note that the following bug and feature requests are logged in GForge with related commit information [[https://github.com/DICE-UNC/jargon/issues]]

Changes

FileNotFoundException declared in PackingIrodsOutputStream signature #150

Removed extraneous exceptions from method signature

deprecate WSO support in jargon altogether #51

Removed jargon-workflow code (WSO) as non-supported in iRODS

add speccol pi to dataobjinppi to avoid xml parse messages in irods log #149

Avoid logged iRODS errors for missing section of DataObjInp_PI by providing SpecColl_PI and KeyValPair_PI structures

Fix lexographic comparison of iRODS version #203

Changed from a string comparison of iRODS reported version to a more sophisticated comparator object

Update FileCloseInp for in_pdmo for iRODS 4.1.9 #205

Update FileCloseInp packing instruction for additional resource information

Special character handling in delete operations seems to be off. #170

Directories can be created with multiple special chars (notably &) but problems may occur in delete. Unit test shows
an iRODS issue referenced at Create/delete file with & char allows create, causes -816000 error on delete #3398, will ignore unit test for now.

IRODSAccount fails with whitespace in default path #189

toURI with white spaces gives URISyntaxException, url encode that information

Add client/server negotiation support for SSL encryption #4

Honor client server negotiation and SSL transport encryption, as well as shared-key encryption for parallel file transfers. (docs coming soon). This is early access and should be used with caution until release time.

IndexOutOfBoundsException in PackingIrodsOutputStream #200

Simplified the buffering code and added unit and functional tests, especially for conditions when the putBufferSize is manipulated in jargon.properties.

-23000 error code from iRODS with parallel file operations #199

Testing with CyberDuck. Added a new IRODSAccessObjectFactory.authenticateIRODSAccountUtilizingCachedConnectionIfPresent to avoid double-opening a connection, reducing side effects
for some usage patterns.

add checksum support to Jargon streaming API #194

Added support for checksumming on close of an IRODSFileOutputStream, respecting checksum and checksum with verification flags in jargon.properties. If either of those flags is true,
a checksum is computed and stored in iRODS. Given the nature of the java.io API, actual verification is not done, just computation and storage in the iCAT.

PAM auth failure when password includes semicolon #195

Added KVP packing instruction support to escape ; character in PAM password, added unit test verification

improve logging in CollectionAndDataObjectListAndSearchAOImpl #135

Added toString methods to result set and result row, limited debug logging of result rows to 100 rows. Fixed a typo in the logging statement for collection listings.

iRODS CS_NEG_REQUIRE + PAM authentication #215

Fixed mismatch between local SSL negotiation stance enum values and iRODS negotiation enum values. Fixed double send of SslEndInp.

"Catalog SQL error" in jargon-core when using Oracle #196

Replicated issue, identified as iRODS server issue, due to missing specific queries. For cat sql errors when checking group authorization, a 'specific_query_patch-bug196.sh' demonstrates a repair to a 4.1.x iRODS installation with Oracle iCAT. See #196 for details.

Connections left open in 4.1.10.0-RC1 #222

Expanded testing to more complete PAM + SSL negotiation permutations, fixed some issues with finalizers triggering and opening and closing the various tunnelled and non-secure connections in these PAM scenarios. There are two paths for SSL tunneling and there were some interactions between these two paths to clean up that caused errors, or showed up in the Jargon logs as finalizer warnings about unclosed connections.

Additional testing for reported issues, minor changes

Login fails if password contains linux escape characters #202

Added test cases, fails to replicate

transfer get of file with parens and spaces in name gives file not found #1

Added test case that fails to replicate

irods + mysql and latin1 charset issues #227

Added test case for MySQL testing. This appears to be resolved by setting UTF8 in MySql as well as in the odbc.ini on iRODS. Will retain test.

Parallel file transfer does not work #228

Added test case. This does not replicate and is pending further study.

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