Merge branch 'main' of github.com:DKISTDC/dkist into profiling

.codecov.yaml

@@ -0,0 +1,11 @@
+comment: off
+coverage:
+  status:
+    project:
+      default:
+        threshold: 0.2%
+
+codecov:
+  require_ci_to_pass: false
+  notify:
+    wait_for_ci: true

.codespellrc

@@ -0,0 +1,13 @@
+[codespell]
+skip = *.asdf,*.fits,*.fts,*.header,*.json,*.xsh,*cache*,*egg*,*extern*,.git,.idea,.tox,_build,*truncated,*.svg,.asv_env,.history,*.hdr
+ignore-words-list =
+    alog,
+    nd,
+    nin,
+    observ,
+    ot,
+    te,
+    upto,
+    afile,
+    precessed,
+    precess

.coveragerc

@@ -0,0 +1,34 @@
+[run]
+omit =
+  dkist/conftest.py
+  dkist/*setup_package*
+  dkist/extern/*
+  dkist/version*
+  dkist/__init__*
+  dkist/utils/_model_to_graphviz.py
+  */dkist/conftest.py
+  */dkist/*setup_package*
+  */dkist/extern/*
+  */dkist/version*
+  */dkist/__init__*
+  */dkist/utils/_model_to_graphviz.py
+
+[report]
+exclude_lines =
+  # Have to re-enable the standard pragma
+  pragma: no cover
+  # Don't complain about packages we have installed
+  except ImportError
+  # Don't complain if tests don't hit assertions
+  raise AssertionError
+  raise NotImplementedError
+  # Don't complain about script hooks
+  def main(.*):
+  # Ignore branches that don't pertain to this version of Python
+  pragma: py{ignore_python_version}
+  # Don't complain about IPython completion helper
+  def _ipython_key_completions_
+  # typing.TYPE_CHECKING is False at runtime
+  if TYPE_CHECKING:
+  # Ignore typing overloads
+  @overload

.cruft.json

@@ -0,0 +1,31 @@
+{
+  "template": "https://github.com/sunpy/package-template",
+  "commit": "29a55419c27cd7a72bfd60fee7cd92fb59769425",
+  "checkout": null,
+  "context": {
+    "cookiecutter": {
+      "package_name": "dkist",
+      "module_name": "dkist",
+      "short_description": "DKIST User Tools",
+      "author_name": "NSO / AURA",
+      "author_email": "[email protected]",
+      "project_url": "https://github.com/DKISTDC/dkist",
+      "license": "BSD 3-Clause",
+      "minimum_python_version": "3.10",
+      "use_compiled_extensions": "n",
+      "enable_dynamic_dev_versions": "y",
+      "include_example_code": "n",
+      "include_cruft_update_github_workflow": "y",
+      "_sphinx_theme": "alabaster",
+      "_parent_project": "",
+      "_install_requires": "",
+      "_copy_without_render": [
+        "docs/_templates",
+        "docs/_static",
+        ".github/workflows/sub_package_update.yml"
+      ],
+      "_template": "https://github.com/sunpy/package-template"
+    }
+  },
+  "directory": null
+}

.flake8

@@ -0,0 +1,32 @@
+[flake8]
+ignore =
+    # missing-whitespace-around-operator
+    E225
+    # missing-whitespace-around-arithmetic-operator
+    E226
+    # line-too-long
+    E501
+    # unused-import
+    F401
+    # undefined-local-with-import-star
+    F403
+    # redefined-while-unused
+    F811
+    # Line break occurred before a binary operator
+    W503,
+    # Line break occurred after a binary operator
+    W504
+max-line-length = 100
+exclude =
+    .git
+    __pycache__
+    docs/conf.py
+    build
+    dkist/__init__.py
+    extern
+    sphinx
+    conftest.py
+
+rst-directives =
+    plot
+docstring-convention = numpy

.github/ISSUE_TEMPLATE/config.yml

@@ -2,7 +2,7 @@ blank_issues_enabled: true
 contact_links:
   - name: DKIST Help Desk
     url: https://nso.atlassian.net/servicedesk/customer/portals
-    about: The offical DKIST support help desk, the best place to ask questions on data access or products etc.
+    about: The official DKIST support help desk, the best place to ask questions on data access or products etc.
   - name: DKIST Community Chat
     url: https://openastronomy.element.io/#/room/#dki-solar-telescope:openastronomy.org
     about: A community support forum to help other community members.

.github/workflows/main.yml

@@ -33,24 +33,47 @@ jobs:
     with:
       default_python: '3.10'
       coverage: 'codecov'
+      posargs: '--color=yes'
       envs: |
         - linux: py312
         - linux: py311
-        - windows: py310-online
-        - macos: py39
+        - windows: py311-online
+        - macos: py310
+        - linux: py310-oldestdeps
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+  docs:
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+    with:
+      default_python: '3.10'
+      coverage: 'codecov'
+      envs: |
         - linux: build_docs-notebooks
           pytest: false
           libraries:
             apt:
               - graphviz
-        - linux: py39-oldestdeps
     secrets:
       CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
+  sdist_verify:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+      - run: python -m pip install -U --user build
+      - run: python -m build . --sdist
+      - run: python -m pip install -U --user twine
+      - run: python -m twine check dist/*
+
   allowed-fail-tests:
     uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
     with:
       coverage: 'codecov'
+      posargs: '--color=yes'
       envs: |
         - linux: py311-devdeps
     secrets:

.github/workflows/sub_package_update.yml

@@ -0,0 +1,84 @@
+# This template is taken from the cruft example code, for further information please see:
+# https://cruft.github.io/cruft/#automating-updates-with-github-actions
+name: Automatic Update from package template
+permissions:
+    contents: write
+    pull-requests: write
+
+on:
+  # Allow manual runs through the web UI
+  workflow_dispatch:
+  schedule:
+    #        ┌───────── minute (0 - 59)
+    #        │ ┌───────── hour (0 - 23)
+    #        │ │ ┌───────── day of the month (1 - 31)
+    #        │ │ │ ┌───────── month (1 - 12 or JAN-DEC)
+    #        │ │ │ │ ┌───────── day of the week (0 - 6 or SUN-SAT)
+    - cron: '0 7 * * 1'  # Every Monday at 7am UTC
+
+jobs:
+  update:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: true
+      matrix:
+        include:
+          - add-paths: .
+            body: apply the changes to this repo.
+            branch: cruft/update
+            commit-message: "Automatic package template update"
+            title: Updates from the package template
+          - add-paths: .cruft.json
+            body: reject these changes for this repo.
+            branch: cruft/reject
+            commit-message: "Reject this package template update"
+            title: Reject new updates from package template
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+
+      - name: Install Cruft
+        run: python -m pip install cruft
+
+      - name: Check if update is available
+        continue-on-error: false
+        id: check
+        run: |
+          CHANGES=0
+          if [ -f .cruft.json ]; then
+            if ! cruft check; then
+              CHANGES=1
+            fi
+          else
+            echo "No .cruft.json file"
+          fi
+
+          echo "has_changes=$CHANGES" >> "$GITHUB_OUTPUT"
+
+      - name: Run update if available
+        if: steps.check.outputs.has_changes == '1'
+        run: |
+          git config --global user.email "${{ github.actor }}@users.noreply.github.com"
+          git config --global user.name "${{ github.actor }}"
+
+          cruft update --skip-apply-ask --refresh-private-variables
+          git restore --staged .
+
+      - name: Create pull request
+        if: steps.check.outputs.has_changes == '1'
+        uses: peter-evans/create-pull-request@v6
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          add-paths: ${{ matrix.add-paths }}
+          commit-message: ${{ matrix.commit-message }}
+          branch: ${{ matrix.branch }}
+          delete-branch: true
+          branch-suffix: timestamp
+          title: ${{ matrix.title }}
+          body: |
+            This is an autogenerated PR, which will ${{ matrix.body }}.
+            [Cruft](https://cruft.github.io/cruft/) has detected updates from the Package Template