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add reviewer sugestions BU-ISCIII#258
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Daniel-VM committed Jun 19, 2024
1 parent 31cc513 commit e00a067
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1 change: 1 addition & 0 deletions relecov_tools/assets/pipeline_utils/viralrecon.py
Original file line number Diff line number Diff line change
Expand Up @@ -137,6 +137,7 @@ def convert_to_json(self, samp_dict):
result_regex = re.search(
"variants_long_table(?:_\d{8})?\.csv", os.path.basename(self.file_path)
)
stderr.print(result_regex.group(0))
if result_regex is None:
stderr.print(
"[red]\tWARN: Couldn't find variants long table file. Expected file name is:"
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