From MuData to SpatialData #384
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Run conda-incubator/setup-miniconda@v3
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Run conda-incubator/setup-miniconda@v3
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Set up job
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Run actions/checkout@v4
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Run conda-incubator/setup-miniconda@v3
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Install Panpipes
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Conda info
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Conda list
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Preparing the data
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Preparing the configuration file
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Preparing the submission file
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Preparing the yaml file
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Review pipeline tasks
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Run pipeline tasks
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Post Run conda-incubator/setup-miniconda@v3
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Post Run actions/checkout@v4
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Complete job
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