update docs for custom linkage

DingWB · Jan 31, 2024 · f4b3edd · f4b3edd
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diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/doctrees/nbsphinx/notebooks/advanced_usage.ipynb b/docs/build/doctrees/nbsphinx/notebooks/advanced_usage.ipynb
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diff --git a/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_40_0.png b/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_40_0.png
diff --git a/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_41_0.png b/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_41_0.png
diff --git a/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_43_0.png b/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_43_0.png
diff --git a/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_44_0.png b/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_44_0.png
diff --git a/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_5_1.png b/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_5_1.png
diff --git a/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_7_1.png b/docs/build/doctrees/nbsphinx/notebooks_advanced_usage_7_1.png
diff --git a/docs/build/doctrees/notebooks/advanced_usage.doctree b/docs/build/doctrees/notebooks/advanced_usage.doctree
diff --git a/docs/build/html/PyComplexHeatmap.annotations.html b/docs/build/html/PyComplexHeatmap.annotations.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.clustermap.html b/docs/build/html/PyComplexHeatmap.clustermap.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.colors.html b/docs/build/html/PyComplexHeatmap.colors.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.dotHeatmap.html b/docs/build/html/PyComplexHeatmap.dotHeatmap.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.example.html b/docs/build/html/PyComplexHeatmap.example.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.html b/docs/build/html/PyComplexHeatmap.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.oncoPrint.html b/docs/build/html/PyComplexHeatmap.oncoPrint.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.tools.html b/docs/build/html/PyComplexHeatmap.tools.html
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/PyComplexHeatmap.utils.html b/docs/build/html/PyComplexHeatmap.utils.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_images/notebooks_advanced_usage_10_1.png b/docs/build/html/_images/notebooks_advanced_usage_10_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_12_1.png b/docs/build/html/_images/notebooks_advanced_usage_12_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_14_1.png b/docs/build/html/_images/notebooks_advanced_usage_14_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_16_1.png b/docs/build/html/_images/notebooks_advanced_usage_16_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_18_1.png b/docs/build/html/_images/notebooks_advanced_usage_18_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_19_1.png b/docs/build/html/_images/notebooks_advanced_usage_19_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_23_0.png b/docs/build/html/_images/notebooks_advanced_usage_23_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_25_0.png b/docs/build/html/_images/notebooks_advanced_usage_25_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_27_0.png b/docs/build/html/_images/notebooks_advanced_usage_27_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_28_0.png b/docs/build/html/_images/notebooks_advanced_usage_28_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_30_0.png b/docs/build/html/_images/notebooks_advanced_usage_30_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_32_1.png b/docs/build/html/_images/notebooks_advanced_usage_32_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_33_0.png b/docs/build/html/_images/notebooks_advanced_usage_33_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_35_0.png b/docs/build/html/_images/notebooks_advanced_usage_35_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_38_0.png b/docs/build/html/_images/notebooks_advanced_usage_38_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_40_0.png b/docs/build/html/_images/notebooks_advanced_usage_40_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_41_0.png b/docs/build/html/_images/notebooks_advanced_usage_41_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_43_0.png b/docs/build/html/_images/notebooks_advanced_usage_43_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_44_0.png b/docs/build/html/_images/notebooks_advanced_usage_44_0.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_5_1.png b/docs/build/html/_images/notebooks_advanced_usage_5_1.png
diff --git a/docs/build/html/_images/notebooks_advanced_usage_7_1.png b/docs/build/html/_images/notebooks_advanced_usage_7_1.png
diff --git a/docs/build/html/_modules/PyComplexHeatmap/annotations.html b/docs/build/html/_modules/PyComplexHeatmap/annotations.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_modules/PyComplexHeatmap/clustermap.html b/docs/build/html/_modules/PyComplexHeatmap/clustermap.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_modules/PyComplexHeatmap/colors.html b/docs/build/html/_modules/PyComplexHeatmap/colors.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_modules/PyComplexHeatmap/dotHeatmap.html b/docs/build/html/_modules/PyComplexHeatmap/dotHeatmap.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_modules/PyComplexHeatmap/example.html b/docs/build/html/_modules/PyComplexHeatmap/example.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_modules/PyComplexHeatmap/oncoPrint.html b/docs/build/html/_modules/PyComplexHeatmap/oncoPrint.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_modules/PyComplexHeatmap/utils.html b/docs/build/html/_modules/PyComplexHeatmap/utils.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
@@ -113,6 +113,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="../notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="../notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/_sources/notebooks/advanced_usage.ipynb.txt b/docs/build/html/_sources/notebooks/advanced_usage.ipynb.txt
diff --git a/docs/build/html/advanced_usage.html b/docs/build/html/advanced_usage.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>
@@ -340,6 +341,7 @@ <h1>Advanced Usage<a class="headerlink" href="#advanced-usage" title="Permalink
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/citation.html b/docs/build/html/citation.html
@@ -115,6 +115,7 @@
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 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Diverging">Diverging</a></li>
 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/clustermap.html b/docs/build/html/clustermap.html
@@ -116,6 +116,7 @@
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 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
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 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/dotHeatmap.html b/docs/build/html/dotHeatmap.html
@@ -116,6 +116,7 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
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diff --git a/docs/build/html/gallery.html b/docs/build/html/gallery.html
@@ -116,6 +116,7 @@
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 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
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 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
@@ -113,6 +113,7 @@
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 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-linkage">Custom linkage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
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 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>

diff --git a/docs/build/html/get_started.html b/docs/build/html/get_started.html
@@ -116,6 +116,7 @@
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 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Custom-annotation">Custom annotation</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="notebooks/advanced_usage.html#Choosing-Build-in-colormap-in-PyComplexHeatmap">Choosing Build-in colormap in PyComplexHeatmap</a><ul>
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 <li class="toctree-l3"><a class="reference internal" href="notebooks/advanced_usage.html#Qualitative">Qualitative</a></li>